Center for Statistical Genetics
The Center for Statistical Genetics at the University of Michigan School of Public Health
Ann Arbor, MI
Pinned Repositories
bamUtil
demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
libStatGen
Useful set of classes for creating statistical genetic programs.
locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
METAL
Meta-analysis of genomewide association scans
Minimac4
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
SLURM-examples
Center for Statistical Genetics's Repositories
statgen/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
statgen/bamUtil
statgen/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
statgen/EPACTS
statgen/emeraLD
tools to efficiently retrieve and calculate LD
statgen/swiss
Software to help identify overlap between association scan results and GWAS hit catalogs.
statgen/fivex
Interactive eQTL visualizations
statgen/Rprs
R package for computing Polygenic Risk Scores (PRS)
statgen/bravo
Deprecated. See new version: https://github.com/statgen/bravo_api - BRowse All Variants Online
statgen/LASER
Locating Ancestry from SEquence Reads
statgen/localzoom
Make interactive LocusZoom plots from a local GWAS file
statgen/gwas-credible-sets
Credible set determination in GWAS results
statgen/raremetal.js
JS implementation of rare variant aggregation tests
statgen/imputationbot
Your personal bot for imputationserver :robot:
statgen/locuszoom-api
Flask server code for LocusZoom APIs
statgen/locuszoom-hosted
A web service to upload and share GWAS results with LocusZoom.js
statgen/SAIGE
statgen/terraform-imputation-server-modules
Wrapper modules for Imputation Server infrastructure
statgen/zorp
A simple GWAS parser + CLI
statgen/RNA-seq-tracking
Tracks TOPMed OMICS qc progress
statgen/terraform-bravo-slurm
Infrastructure for slurm on GCP to provide compute for Bravo data prep
statgen/terraform-bravo-slurm-network
Network and persistent storage for slurm on GCP
statgen/ansible-bravo-slurm
Deployment of data and tooling to run BRAVO data prep on a GCP slurm.
statgen/bravo_ui
Front end to navigate and visualize results from BRAVO API
statgen/genepi-libs
Genepi Libraries
statgen/LASER-Hadoop
statgen/MetaMinimac2
statgen/monitor-topmed
statgen/r2-estimator
Annotates imputed vcf/bcf/sav files with r-squared estimates.
statgen/vcf-patch