Center for Statistical Genetics

The Center for Statistical Genetics at the University of Michigan School of Public Health

Ann Arbor, MI

Pinned Repositories

bamUtil
Language:C++89 17 5330
demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
Language:C++122 10 10326
libStatGen
Useful set of classes for creating statistical genetic programs.
Language:C++52 16 2129
locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Language:JavaScript157 14 15329
locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
Language:Python59 13 1819
METAL
Meta-analysis of genomewide association scans
Language:C++49 11 4113
Minimac4
Language:C++57 11 7221
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
Language:Python164 12 20067
popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Language:C++43 9 7316
SLURM-examples
Language:Python88 28 629

Center for Statistical Genetics's Repositories

statgen/SLURM-examples
Language:Python88 28 629
statgen/locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
Language:Python59 13 1819
statgen/fastQValidator
Validate FastQ Files
Language:C++36 11 2010
statgen/gotcloud
Genomes on the Cloud, Mapping & Variant Calling Pipelines
Language:C++33 19 2019
statgen/verifyBamID
Language:C++27 9 1214
statgen/pheweb-rg-pipeline
Genetic correlation calculation pipeline via summary statistics for PheWeb
Language:Nextflow13 8 02
statgen/topmed_freeze3_calling
TOPMed Freeze 3 variant calling pipeline
Language:C10 6 15
statgen/Raremetal2
(beta) An updated version of meta-analysis software Raremetal.
Language:C++5 11 41
statgen/qplot
qplot
Language:C++3 7 13
statgen/cram-access-tools
A set of tools for accessing and manipulating CRAM files
Language:Dockerfile1 8 0
statgen/gvs-public
The public base of gvs, which does not contain any secret keys or emails
Language:Python1
statgen/Minimac3
Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.
Language:C++1 9 0
statgen/phegraph
Language:HTML1 8 0
statgen/sequencing_comparison
Language:Python1 8 0
statgen/statgen-tools-image
A pre-made machine image with a set of commonly used tools
Language:Shell1 8 0
statgen/bdsi-demo-2019
Language:Python
statgen/bravo-pipeline
(DEPRECATED) Data preparation pipeline for BRAVO. See https://github.com/statgen/bravo_data_prep
Language:C++2
statgen/csg-python
Instructions for setting up python3
5 0
statgen/csglib
Very early draft of a CSG python package.
Language:Python
statgen/docker-alignment
Dockerfile for Alignment
Language:Dockerfile7 03
statgen/docker-saige
Docker Image for SAIGE
Language:Dockerfile8 02
statgen/fusera-server-deployment
A GCP deployment configuration for accessing fusera data with IGV.
Language:HTML9 0
statgen/gfg-interactive
Interactive survey module (ISM) for Genes for Good
Language:JavaScript14 01
statgen/htslib
C library for high-throughput sequencing data formats
Language:C2 0
statgen/m3vcftools
Language:C++
statgen/mr-eel
Language:HTML8 0
statgen/savr
R interface for SAV files.
Language:C++1
statgen/singularity-epacts
Singularity Image for EPACTS
8 0
statgen/singularity-saige
Singularity Image for SAIGE
8 0
statgen/statgen.github.io
6 0