stefanhahmann
Computer scientist with a background in geoinformatics. Currently working in bio image analysis.
Cluster of Excellence "Physics of Life", TU DresdenDresden, Germany
Pinned Repositories
blog
Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
JDLL
The Java library to run Deep Learning models
jCrowdSimulator
A crowd simulation library and user interface written in Java. Implements the Social Force Model of Helbing et al.
openlr
This repository contains an implementation to transfer traffic incident data requested from HERE Traffic API to an OpenStreetMap database. This allows to view HERE traffic data in GIS Viewer, such as QGIS.
mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
mastodon-deep-lineage
A collection of plugins to analyse lineages of tracked objects in Mastodon
.github
Public organization profile for the Mastodon-SC organization.
BluetoothHDPtest
This app contains a Test for the Bluetooth Health Device Profile. It includes access to A&D Blood Pressure Monitor and Nonin Pulse Oxymeter.
WaterNetAnalyzer
A QGIS3 plugin to create a water network (sewer network, river network)
stefanhahmann's Repositories
stefanhahmann/BluetoothHDPtest
This app contains a Test for the Bluetooth Health Device Profile. It includes access to A&D Blood Pressure Monitor and Nonin Pulse Oxymeter.
stefanhahmann/mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
stefanhahmann/WaterNetAnalyzer
A QGIS3 plugin to create a water network (sewer network, river network)
stefanhahmann/.github
Public organization profile for the Mastodon-SC organization.
stefanhahmann/afeefa-backend-api
api of our content management system
stefanhahmann/clesperantoj_prototype
A Java Wrapper around CLIc / clesperanto
stefanhahmann/jsprit
jsprit is a java based, open source toolkit for solving rich vehicle routing problems
stefanhahmann/scijava-coding-style
SciJava Coding Styles
stefanhahmann/vroom-frontend
Web frontend for VROOM
stefanhahmann/imagej.github.io
The ImageJ wiki
stefanhahmann/JDLL
The Java library to run Deep Learning models
stefanhahmann/LineageTree
Module to read and "work" with lineage trees
stefanhahmann/list-of-update-sites
The update sites ImageJ2 knows about automatically
stefanhahmann/mastodon-app
stefanhahmann/mastodon-collaborative
Mastodon plugins to foster collaborative annotations
stefanhahmann/mastodon-collection
stefanhahmann/mastodon-ctc
Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
stefanhahmann/mastodon-ellipsoid-fitting
stefanhahmann/mastodon-example-data
stefanhahmann/mastodon-ext-viewers
Tracking data transfers from Mastodon to various viewers (e.g., sciview or Blender)
stefanhahmann/mastodon-graph
stefanhahmann/mastodon-pasteur
Mastodon plugins developed in the context of Pasteur users projects.
stefanhahmann/mastodon-selection-creator
A selection creator UI for Mastodon, as a Mastodon plugin.
stefanhahmann/mastodon-tomancak
stefanhahmann/mastodon-tracking
Basic tracking algorithms based on Mastodon data structures.
stefanhahmann/pom-scijava
Friendly base POM for all SciJava-based software
stefanhahmann/scijava-common
A plugin framework and application container with built-in extensibility mechanism :electric_plug:
stefanhahmann/scijava-ui-swing
SciJava UI components for Java Swing.
stefanhahmann/stardist3d-java
A repository containing experiments to use StarDist3d algorithms from Java
stefanhahmann/vroom-frontend-docker
Dockerized VROOM Frontend