stefankusch
Molecular biologist, working on genomics, transcriptomics, and evolution of fungal plant pathogens. Interested in determinants of pathogen virulence.
Forschungszentrum JülichEurope
Pinned Repositories
teloclip
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
UV_mutagenesis_Bgh-K1-
TEtrimmer
TEtrimmer: a novel tool to automate manual curation of transposable elements
basics.R
repository for R scripts and work-arounds
genome_leveillula_2020
This is a collection of scripts used to perform genome assembly of Leveillula taurica.
genome_Myriosclerotinia_2020
Genome assembly (short and long read) and quality control.
sclerotinia_2020
This repository contains a summary of scripts used for analysis of Sclerotinia sclerotiorum.
smallRNA_seq_analysis
Analysis of small RNA sequencing data obtained from Blumeria graminis f.sp. hordei-infected Hordeum vulgare plants. The sample types include epiphytic mycelium, infected epidermis, isolated haustoria, microsomes from infected epidermis (all 4 days past inoculation), as well as apoplectic fluid from non-infected and infected plants (3 days past inoculation).
stefankusch's Repositories
stefankusch/genome_Myriosclerotinia_2020
Genome assembly (short and long read) and quality control.
stefankusch/basics.R
repository for R scripts and work-arounds
stefankusch/genome_leveillula_2020
This is a collection of scripts used to perform genome assembly of Leveillula taurica.
stefankusch/sclerotinia_2020
This repository contains a summary of scripts used for analysis of Sclerotinia sclerotiorum.
stefankusch/smallRNA_seq_analysis
Analysis of small RNA sequencing data obtained from Blumeria graminis f.sp. hordei-infected Hordeum vulgare plants. The sample types include epiphytic mycelium, infected epidermis, isolated haustoria, microsomes from infected epidermis (all 4 days past inoculation), as well as apoplectic fluid from non-infected and infected plants (3 days past inoculation).