stemangiola/CuratedAtlasQueryR
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
RGPL-3.0
Issues
- 2
cache for pseudobulk same as for single cell?
#144 opened by stemangiola - 2
could not run pseudobulk on imported data
#149 opened by cynthialiu - 7
How to import dataset from collection?
#151 opened by YXC33 - 1
pseuodbulk file not found in the cloud - 3fe53a40-38ff-4f25-b33b-e4d60f2289ef
#146 opened by stemangiola - 0
- 0
Add citation file
#141 opened by stemangiola - 4
add get_pseudobulk API
#136 opened by stemangiola - 0
- 2
DelayedMatrix not Sparse?
#127 opened by stemangiola - 1
- 2
submit the package to Bioconductor
#101 opened by stemangiola - 0
Referenced table not found!
#128 opened by stemangiola - 0
- 1
Trying to use the package: accessing the METADATA_URL
#125 opened by shivUSF - 2
- 6
duplicate 'row.names' are not allowed
#123 opened by stemangiola - 0
`Error: Binder Error: Referenced table "metadata.0.2.3.parquet" not found!`
#121 opened by multimeric - 0
Add a download-nly function, for deploying the database without compiling a 30M cell SingleCellExperiment
#120 opened by stemangiola - 2
how to cite this work ?
#119 opened by LenisLin - 3
Matrix::rowSums gets -> `object 'Csparse_validate' not found` after loading `CuratedAtlasQuery`
#116 opened by stemangiola - 5
- 3
- 0
correct typo in tissue harmonised
#106 opened by stemangiola - 17
Prepare users for 36GB download
#60 opened by vjcitn - 5
Persistent connections
#44 opened by multimeric - 5
Minor repo/website feedback
#90 opened by multimeric - 5
Fix github actions
#54 opened by stemangiola - 0
plan forward
#85 opened by stemangiola - 4
"Author Categories" accessible?
#95 opened by jgilis - 1
- 0
querying counts by default
#92 opened by stemangiola - 7
- 1
Document the solution for `namespace ‘dbplyr’ 2.2.1 is being loaded, but >= 2.3.0 is required`
#88 opened by multimeric - 3
- 1
- 0
Remove `library()` call from vignette/readme
#87 opened by multimeric - 3
Different row numbers
#82 opened by multimeric - 10
`_cell` must be size 202 or 1, not 157.
#78 opened by stemangiola - 0
- 3
Database update process
#74 opened by multimeric - 1
minor bugs/improvements
#65 opened by mtmorgan - 0
- 1
Error while installing package
#67 opened by jIskCoder - 0
Documentation inconsistent?
#61 opened by vjcitn - 1
get_metadata() alone give no output
#66 opened by stemangiola - 7
decrease DB size, through a permanent VIEW?
#56 opened by stemangiola - 0
Create GIF video for the API usage
#55 opened by stemangiola - 1
this query fails
#45 opened by stemangiola - 0
- 19
Ship compressed SQLite ?
#48 opened by stemangiola