stephaniehicks
Associate Professor in Biostatistics and Biomedical Engineering at Johns Hopkins University
Johns Hopkins UniversityBaltimore, MD
Pinned Repositories
OrchestratingSingleCellAnalysis-release
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
mbkmeans
K-means clustering for large single-cell datasets
fasthplus
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioconductorNotes
My notes/usage examples for various Bioconductor packages
classroomNotes
Notes on academic-related things
jhustatcomputing2021
Course website for JHSPH Statistical Computing (Biostatistics 140.776) in Fall 2021
jhustatcomputing2022
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022
methylCC
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
qsmooth
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
stephaniehicks's Repositories
stephaniehicks/qsmooth
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
stephaniehicks/methylCC
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
stephaniehicks/jhustatcomputing2022
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022
stephaniehicks/jhustatprogramming2022
Course website for Biostat 840 in Fall 2022
stephaniehicks/jhustatcomputing2021
Course website for JHSPH Statistical Computing (Biostatistics 140.776) in Fall 2021
stephaniehicks/quantro
quantro: Bioconductor package to test for global normalization assumptions
stephaniehicks/large-scale-data-base
Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr
stephaniehicks/stephaniehicks.github.io
Website for Stephanie C. Hicks
stephaniehicks/jhuquantneuro2022
Course materials for the JHU Quantitative molecular neuroscience Fall 2022 course (ME.440.825.0001.FA22) from Stephanie Hicks
stephaniehicks/jhustatprogramming2024
Course website for Biostat 140.777 in Fall 2024
stephaniehicks/quantify-snrna
stephaniehicks/atlasscalespatialclustering
Repo to share code for the atlas-scale spatial clustering CZI project
stephaniehicks/cshlcg2023
Course material from Stephanie Hicks for CSHL Computational Genomics 2023
stephaniehicks/fasthpluspaper
Files for the fasthplus paper
stephaniehicks/jhustatprogramming2023
Course website for Biostat 140.777 in Fall 2023
stephaniehicks/superwomen
Children's book titled Super Women: Growing Up to be Statisticians and Data Scientists
stephaniehicks/biostat776-intro-stephanie-hicks
Website for Stephanie Hicks in Biostatistics 776
stephaniehicks/biostat776-stephanie
stephaniehicks/cshlcg2022
Course material from Stephanie Hicks for CSHL Computational Genomics 2022 course
stephaniehicks/cshlgsd2022
Course material from Stephanie Hicks for CSHL Genome Scale Data 2022
stephaniehicks/forFrank
stephaniehicks/greetings
This is my greetings R package
stephaniehicks/jhuads2021
Repo for JHU ADS 2021 lectures from Stephanie Hicks
stephaniehicks/loopy-browser
A performant scientific image visualization system.
stephaniehicks/mbkmeans
K-means clustering for large single-cell datasets
stephaniehicks/singlecelldemo
stephaniehicks/stephanie-hicks-CV
stephaniehicks/stephaniehicks
my personal repository
stephaniehicks/taylor_swift_discography
stephaniehicks/vanessalairdpostdcards