stephaniehicks

OrchestratingSingleCellAnalysis-release

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

mbkmeans

K-means clustering for large single-cell datasets

fasthplus

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioconductorNotes

My notes/usage examples for various Bioconductor packages

classroomNotes

Notes on academic-related things

jhustatcomputing2021

Course website for JHSPH Statistical Computing (Biostatistics 140.776) in Fall 2021

jhustatcomputing2022

Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022

methylCC

R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms

qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

stephaniehicks/qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

stephaniehicks/methylCC

R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms

stephaniehicks/jhustatcomputing2022

Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022

stephaniehicks/jhustatprogramming2022

Course website for Biostat 840 in Fall 2022

stephaniehicks/jhustatcomputing2021

Course website for JHSPH Statistical Computing (Biostatistics 140.776) in Fall 2021

stephaniehicks/quantro

quantro: Bioconductor package to test for global normalization assumptions

stephaniehicks/large-scale-data-base

Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr

stephaniehicks/stephaniehicks.github.io

Website for Stephanie C. Hicks

stephaniehicks/jhuquantneuro2022

Course materials for the JHU Quantitative molecular neuroscience Fall 2022 course (ME.440.825.0001.FA22) from Stephanie Hicks

stephaniehicks/quantify-snrna

stephaniehicks/atlasscalespatialclustering

Repo to share code for the atlas-scale spatial clustering CZI project

stephaniehicks/jhustatprogramming2023

Course website for Biostat 140.777 in Fall 2023

stephaniehicks/benchmarkfdrData2019

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

stephaniehicks/bodymapRat

This package contains a SummarizedExperiment object from the Yu et al. (2014) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. PMID: 24510058

stephaniehicks/cshlcg2023

Course material from Stephanie Hicks for CSHL Computational Genomics 2023

stephaniehicks/fasthpluspaper

Files for the fasthplus paper

stephaniehicks/superwomen

Children's book titled Super Women: Growing Up to be Statisticians and Data Scientists

stephaniehicks/biostat776-intro-stephanie-hicks

Website for Stephanie Hicks in Biostatistics 776

stephaniehicks/biostat776-stephanie

stephaniehicks/cshlcg2022

Course material from Stephanie Hicks for CSHL Computational Genomics 2022 course

stephaniehicks/cshlgsd2022

Course material from Stephanie Hicks for CSHL Genome Scale Data 2022

stephaniehicks/forFrank

stephaniehicks/greetings

This is my greetings R package

stephaniehicks/jhuads2021

Repo for JHU ADS 2021 lectures from Stephanie Hicks

stephaniehicks/loopy-browser

A performant scientific image visualization system.

stephaniehicks/mbkmeans

K-means clustering for large single-cell datasets

stephaniehicks/singlecelldemo

stephaniehicks/stephanie-hicks-CV

stephaniehicks/stephaniehicks

my personal repository

stephaniehicks/vanessalairdpostdcards