stephenshank's Stars
galaxyproject/ptdk
Webserver for Planemo Training Development Kit
cumbof/MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
veg/cawlign
kenns29/react-svg-brush
A React-based brush library that emulates the d3-brush behavior.
ShengLi/methclone
Automatically exported from code.google.com/p/methclone
higham/what-is
Important concepts in numerical linear algebra and related areas
galaxyproject/small-scale-galaxy-admins
mcguinness/saml-idp
Simple SAML Identity Provider (IdP) for Node
benfred/venn.js
Area proportional Venn and Euler diagrams in JavaScript
veg/pub-data
Publically available alignments (and trees) from published dN/dS analyses
DataExpert-io/data-engineer-handbook
This is a repo with links to everything you'd ever want to learn about data engineering
MathOnco/IsoMaTrix
A framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations (MATLAB, Java)
karpathy/llama2.c
Inference Llama 2 in one file of pure C
PromtEngineer/localGPT
Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.
chapyter/chapyter
Chapyter: ChatGPT Code Interpreter in Jupyter Notebooks
chanzuckerberg/single-cell-curation
Code and documentation for the curation of cellxgene datasets
lbcb-sci/raven
De novo genome assembler for long uncorrected reads
dohlee/metheor
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
whatshap/whatshap
Read-based phasing of genomic variants, also called haplotype assembly
huggingface/peft
🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.
cosmograph-org/cosmos
GPU-accelerated force graph layout and rendering
nichtdax/awesome-totally-open-chatgpt
A list of totally open alternatives to ChatGPT
greenelab/GCB535
Materials for GCB535 at Penn.
caufieldjh/awesome-bioie
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
nebiolabs/ampseer
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.
aineniamh/snipit
snipit: summarise snps relative to your reference sequence
TheAlgorithms/Rust
All Algorithms implemented in Rust
williamboman/mason.nvim
Portable package manager for Neovim that runs everywhere Neovim runs. Easily install and manage LSP servers, DAP servers, linters, and formatters.
cleanlab/cleanlab
The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.
tracel-ai/burn
Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.