stephenshank

stephenshank's Stars

• galaxyproject/ptdk

  Webserver for Planemo Training Development Kit

  Language:Python42

• cumbof/MetaSBT

  A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

  Language:Python43

• veg/cawlign

  Language:C++2

• kenns29/react-svg-brush

  A React-based brush library that emulates the d3-brush behavior.

  Language:JavaScript72

• ShengLi/methclone

  Automatically exported from code.google.com/p/methclone

  Language:C++53

• higham/what-is

  Important concepts in numerical linear algebra and related areas

  72159

• galaxyproject/small-scale-galaxy-admins

  8

• mcguinness/saml-idp

  Simple SAML Identity Provider (IdP) for Node

  Language:JavaScript440173

• benfred/venn.js

  Area proportional Venn and Euler diagrams in JavaScript

  Language:JavaScript1k216

• veg/pub-data

  Publically available alignments (and trees) from published dN/dS analyses

  2

• DataExpert-io/data-engineer-handbook

  This is a repo with links to everything you'd ever want to learn about data engineering

  10.2k1.4k

• MathOnco/IsoMaTrix

  A framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations (MATLAB, Java)

  Language:Java91

• karpathy/llama2.c

  Inference Llama 2 in one file of pure C

  Language:C17.1k2k

• PromtEngineer/localGPT

  Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

  Language:Python19.7k2.2k

• chapyter/chapyter

  Chapyter: ChatGPT Code Interpreter in Jupyter Notebooks

  Language:Python81566

• chanzuckerberg/single-cell-curation

  Code and documentation for the curation of cellxgene datasets

  Language:Python3723

• lbcb-sci/raven

  De novo genome assembler for long uncorrected reads

  Language:C++20021

• dohlee/metheor

  :comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)

  Language:Rust438

• whatshap/whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python33038

• huggingface/peft

  🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.

  Language:Python15.6k1.5k

• cosmograph-org/cosmos

  GPU-accelerated force graph layout and rendering

  Language:TypeScript80853

• nichtdax/awesome-totally-open-chatgpt

  A list of totally open alternatives to ChatGPT

  4.5k190

• greenelab/GCB535

  Materials for GCB535 at Penn.

  Language:Jupyter Notebook208

• caufieldjh/awesome-bioie

  🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

  33133

• nebiolabs/ampseer

  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.

  Language:Rust141

• aineniamh/snipit

  snipit: summarise snps relative to your reference sequence

  Language:Python13426

• TheAlgorithms/Rust

  All Algorithms implemented in Rust

  Language:Rust22k2.1k

• williamboman/mason.nvim

  Portable package manager for Neovim that runs everywhere Neovim runs. Easily install and manage LSP servers, DAP servers, linters, and formatters.

  Language:Lua7.5k264

• cleanlab/cleanlab

  The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

  Language:Python9.3k722

• tracel-ai/burn

  Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.

  Language:Rust8.3k403