Pinned Repositories
alignment.js
Javascript alignment viewer
d3-react-axis
A React axis component that tries to match D3's axis API
datamonkey-js
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser
hyphy-vision
Visualize HyPhy results in your browser
mutation-selection
Code for phylogenetic mutation-selection models utilized in the Liberles research group.
phylotree.js
Interactive viewer of phylogenetic trees
react-phylotree
A phylogenetic tree component using phylotree.js and React
superseal
Reference guided viral quasispecies reconstruction
tagvirology
TApestri/Galaxy for virology
wavetools
Codes for numerically solving wave equations and full waveform inversion.
stephenshank's Repositories
stephenshank/d3-react-axis
A React axis component that tries to match D3's axis API
stephenshank/superseal
Reference guided viral quasispecies reconstruction
stephenshank/tagvirology
TApestri/Galaxy for virology
stephenshank/datamonkey-js
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser
stephenshank/hyphy-vision
Visualize HyPhy results in your browser
stephenshank/phylotree.js
Interactive viewer of phylogenetic trees
stephenshank/argos-galaxy
stephenshank/assemblyqc
Computing various quality control metrics for assemblies
stephenshank/bioconda-recipes
Conda recipes for the bioconda channel.
stephenshank/bioviz-js-template
A template for making interactive and custom biological data visualizations with JavaScript
stephenshank/catfish
Natural selection analysis of catfish exomes
stephenshank/coronavirus-visualization
Visualizing adaptation and recombination in the ongoing coronavirus epidemic
stephenshank/d3-react-colorbar
A color bar component for making data visualizations with React and d3-scale
stephenshank/d3-react-virus
Cartoons of viruses using React and D3
stephenshank/data.argosdb
stephenshank/datamonkey-js-server
stephenshank/dotfiles
stephenshank/epiphy
Epistatic selection models in phylogenetics
stephenshank/galaxyhyphytools
A few bioinformatics utilities used on galaxy.hyphy.org
stephenshank/haplotype-reconstruction
Benchmarking various viral haplotype reconstruction programs
stephenshank/hivtrace-viz
stephenshank/phredmeans
Computing various phred scores averages from a FASTQ file
stephenshank/RASCL
stephenshank/rebar
Rust-based Extraction of Barcodes Among Reads
stephenshank/s2-chess
Dabbling in some open source chess libraries
stephenshank/seed
Somatic epigenetic evolution detector
stephenshank/the_observable_galaxy
Integrating the ObservableHQ notebook platform with the Galaxy project
stephenshank/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
stephenshank/tu-duke-hiv
Clustering and drug resistance analyses of HIV
stephenshank/tu-pharmacoinformatics
Pharmacoinformatics tools from Temple University