Pinned Repositories
alignment.js
Javascript alignment viewer
d3-react-axis
A React axis component that tries to match D3's axis API
datamonkey-js
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser
hyphy-vision
Visualize HyPhy results in your browser
mutation-selection
Code for phylogenetic mutation-selection models utilized in the Liberles research group.
phylotree.js
Interactive viewer of phylogenetic trees
react-phylotree
A phylogenetic tree component using phylotree.js and React
superseal
Reference guided viral quasispecies reconstruction
tagvirology
TApestri/Galaxy for virology
wavetools
Codes for numerically solving wave equations and full waveform inversion.
stephenshank's Repositories
stephenshank/mutation-selection
Code for phylogenetic mutation-selection models utilized in the Liberles research group.
stephenshank/aBayesQR
stephenshank/babel-plugin-convert-jsx-extension-to-js
Convert jsx file extensions to js in imports for making React libraries
stephenshank/bcell-phylo
Take antibody sequence data from JSON to FASTA format
stephenshank/BioExt
A few handy bioinformatics tools not already within BioPython
stephenshank/blog
Professional blog
stephenshank/boxbi
stephenshank/cancer-data
TCGA data acquisition and processing for Project Cognoma
stephenshank/CCDL
stephenshank/ciliates
Analysis of ciliate telomere end binding proteins for the Liberles research group.
stephenshank/cognoma
Putting machine learning in the hands of cancer biologists
stephenshank/coinfection
Investigation coinfection in SARS-CoV-2 data
stephenshank/compartmentalization
Exploration of statistical tests for compartmentalization
stephenshank/contrastFELViewer
stephenshank/core-service
Cognoma Core API
stephenshank/dojo-git-tutorial
A tutorial for TU Dojo and Git
stephenshank/galaxy
Data intensive science for everyone.
stephenshank/galaxy-landing-page
Center pane for the VEG Galaxy server
stephenshank/HIV-NGS
HIV NGS Processing pipeline
stephenshank/hyphy
HyPhy: Hypothesis testing using Phylogenies
stephenshank/hyphy-gui
Desktop application for HyPhy
stephenshank/hyphy-site
HyPhy Markdown Site
stephenshank/machine-learning
Machine learning for Project Cognoma
stephenshank/mmvc
Multinomial mixture variant caller
stephenshank/RegressHaplo
stephenshank/seizure-detection
Predicting seizures from preictal/ictal data for Kaggle competition.
stephenshank/taed-pv
Protein viewer for The Adaptive Evolution Database.
stephenshank/tn93
TN93 fast distance calculator
stephenshank/tn93_optimizations
Exploratory data analysis for TN93 algorithmics
stephenshank/translate-gard
Converts HyPhy 2.3.2 GARD output to JSON