Pinned Repositories
pluto-cwl
CWL workflows for helix filter scripts
IR-interpreter
Web app for clinical interpretation of Ion Reporter variant results
NGS580-nf
Target exome sequencing analysis for NYU NGS580 gene panel
Bioinformatics
Bioinformatics analysis scripts, workflows, general code examples
IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
image-sort
Program to sort images by average color values
nextflow-demos
Example Nextflow pipelines and programming techniques
reference-annotations
Makefile for reference annotations for genes & genomic regions
reportIT
IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results
stevekm's Repositories
stevekm/AutoReportLite
Automatic analysis pipline & reporting template
stevekm/NYU-Bioinformatics-pipeline-Archive
Archived copy of Bioinformatics ChIP-Seq and HiC pipelines
stevekm/bash_commands
Short bash scripts that I've written and / or found useful. Also check my gists; https://gist.github.com/stevekm
stevekm/hic-bench_documentation
User manuals for the HiC-Bench software
stevekm/african-pca
stevekm/dagobah-training
Training ground for aspiring Galaxy skywalkers
stevekm/emoji
The Ultimate Emoji List
stevekm/gcc2016-ansible
Ansible playbooks and roles from the Galaxy Community Conference 2016
stevekm/HeatmapTutorial
stevekm/references
BibTeX references for projects
stevekm/Stats
R projects, scripts, and statistical analysis, along with TeX and LaTeX workflows
stevekm/stevekm.github.io
Personal website
stevekm/Structural_Variants_CSHL
stevekm/text-trends
A program to find common phrases in a text document
stevekm/tutorials