stevetsa

Computational Biologist in Cancer Genomics, Immunology, and Microbe Analysis.

Pinned Repositories

2018-ACMBCB-workshop
NCI Cloud Resources Workshop https://stevetsa.github.io/post/acmbcb-ncicr/
Language:wdl0 2 00
addon
Language:Jupyter Notebook0 1 00
ATACFlow
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
Language:Jupyter Notebook0 2 01
Attain-Hackathon-Team-See-Sharp-
Attain Hackathon page for See Sharp
Language:HTML0 2 00
awesome-biomedical-data-science-training
2 2 00
awesome-metadata
A list of resources for metadata tools, standards and/or development
11 2 00
awesome-microbes
List of computational resources for analyzing microbial sequencing data.
63 7 327
awesome-TCM
Description List of computational resources for analyzing traditional chinese medicine (TCM) or herbal medicine.
3 2 01
BISCUIT
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
Language:R2 3 01
nlmreproducibility
Language:Jupyter Notebook4 3 10

stevetsa's Repositories

stevetsa/awesome-microbes
List of computational resources for analyzing microbial sequencing data.
63 7 327
stevetsa/nlmreproducibility
Language:Jupyter Notebook4 3 10
stevetsa/awesome-TCM
Description List of computational resources for analyzing traditional chinese medicine (TCM) or herbal medicine.
3 2 01
stevetsa/awesome-biomedical-data-science-training
2 2 00
stevetsa/2018-ACMBCB-workshop
NCI Cloud Resources Workshop https://stevetsa.github.io/post/acmbcb-ncicr/
Language:wdl0 2 00
stevetsa/addon
Language:Jupyter Notebook0 1 00
stevetsa/awesome-data-science-workshops
with a focus on biomedical data science
2 0
stevetsa/awesome-fhir-apps
2 0
stevetsa/blast_plus_docs
stevetsa/Bugs_And_Drugs
A Versatile Antibiotic Resistance Pipeline
Language:Jupyter Notebook2 0
stevetsa/comp-tools-explorer
data visualization for exploring computational projects
Language:JavaScript1 0
stevetsa/conda
Specifying a conda environment with `environment.yml`
Language:Jupyter Notebook2 0
stevetsa/docker
Language:C++2 0
stevetsa/docker-cloudsra
SRA-toolkits for access SRA data in commercial clouds
Language:Dockerfile2 0
stevetsa/docker-stacks
Ready-to-run Docker images containing Jupyter applications
Language:Shell2 0
stevetsa/fhir-exercises
Language:HTML1 0
stevetsa/jupyter-blast-docker
This is a repository containing a Docker image of jupyter notebook and blast
Language:Jupyter Notebook2 0
stevetsa/jupyter-blast-docker-binder
Language:Jupyter Notebook2 0
stevetsa/mmtf-docker
A Docker Image containing Macromolecular Transmission Format (MMTF)
Language:Shell3 0
stevetsa/mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
Language:Jupyter Notebook1 0
stevetsa/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Language:Python1 0
stevetsa/odsetdocker
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stevetsa/odsetdocker2
Language:Dockerfile2 01
stevetsa/pgap
NCBI Prokaryotic Genome Annotation Pipeline
Language:Common Workflow Language1 0
stevetsa/Pipeliner
Pipeliner Program
Language:Ragel2 0
stevetsa/r-docker
Docker images for R
Language:Dockerfile1 0
stevetsa/reactstrap
Simple React Bootstrap 4 components
Language:JavaScript2 0
stevetsa/SeleniumDocker
Standalone Selenium from jupyter/datascience-notebook image, with Chrome and Firefox drivers.
Language:Dockerfile1 0
stevetsa/test
2 0
stevetsa/Viral-VDAP
Viral VDAP: a viral alignment, variant discovery, and annotation pipeline launched at the NCBI-Hackathon 2019
Language:Shell1 0