Pinned Repositories
2018-ACMBCB-workshop
NCI Cloud Resources Workshop https://stevetsa.github.io/post/acmbcb-ncicr/
addon
ATACFlow
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
Attain-Hackathon-Team-See-Sharp-
Attain Hackathon page for See Sharp
awesome-biomedical-data-science-training
awesome-metadata
A list of resources for metadata tools, standards and/or development
awesome-microbes
List of computational resources for analyzing microbial sequencing data.
awesome-TCM
Description List of computational resources for analyzing traditional chinese medicine (TCM) or herbal medicine.
BISCUIT
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
nlmreproducibility
stevetsa's Repositories
stevetsa/Attain-Hackathon-Team-See-Sharp-
Attain Hackathon page for See Sharp
stevetsa/BioC2017_TCGA_GTEx_BOF
This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx
stevetsa/blackburn
A Hugo theme built using Yahoo's Pure CSS
stevetsa/Book-SocialMediaMiningPython
Companion code for the book "Mastering Social Media Mining with Python"
stevetsa/chiron-humann2
https://github.com/stevetsa/Chiron
stevetsa/ClearMap
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
stevetsa/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
stevetsa/docker-jupyter-mmtf
stevetsa/docker-magicblast
stevetsa/docker-soapdenovo
stevetsa/docker-virgo
stevetsa/GeneExpressionAging
Gene expression viewer template
stevetsa/HackathonBaseImages
Docker and Server Images for Hackathons and Hackathon Products
stevetsa/metadata-directory
Prototype metadata directory for the Research Data Alliance:
stevetsa/Metaphlan-ISBCGC
stevetsa/Metaphlan-ISBCGC-Dockstore
stevetsa/Metaphlan-SBCGC
A description of Metaphlan workflow on the Seven Bridges CGC platform
stevetsa/minimal
Minimal is a Jekyll theme for GitHub Pages
stevetsa/NanoporeMapper
A simple command line tool to map nanopore reads with high accuracy
stevetsa/phlan
stevetsa/RNA_mapping
stevetsa/rnaseqview
RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon
stevetsa/samtools
stevetsa/SC3
Super Concise Single Cell Snp Caller
stevetsa/shiny
stevetsa/SpoonFedNanopore
The world's simplest open-source nanopore alignment and assembly algorithm
stevetsa/table-visualization
stevetsa/ViRGo
Single Cell RNA Variant Viewer
stevetsa/WholeGenomeExpression
Viewing genome expression on the gene and genome level
stevetsa/wholegenomeexpression-docker
Dockerfile for visualizing RNAseq