stjude-biohackathon/CRCminer

Issues

• Implement PWM scanning.

  #4 opened 2 years ago by j-andrews7
  1

• Consider methods for valley/subpeak finding from H3K27ac signal data.

  #18 opened 2 years ago by j-andrews7
  1

• Limit to subpeak regions for motif scanning (and output them).

  #8 opened 2 years ago by j-andrews7
  0

• Adjust meme2gene.py script to deal with potential multiple IDs returned for specific query

  #15 opened 2 years ago by j-andrews7
  0

• Create skeleton package & pick build framework

  #6 opened 2 years ago by j-andrews7
  1

• Determine program CLI commands, arguments, and options.

  #10 opened 2 years ago by j-andrews7
  0

• PWM mapping to common gene IDs.

  #2 opened 2 years ago by j-andrews7
  0

• Identify TF cliques & output them.

  #9 opened 2 years ago by j-andrews7
  0

• Interface for the dashboard using Plotly Dash

  #11 opened 2 years ago by pandurang-kolekar
  0

• Determine PWM motif format.

  #1 opened 2 years ago by j-andrews7
  0

• Determine network generation framework.

  #3 opened 2 years ago by j-andrews7
  1

• Output all network nodes and edges.

  #7 opened 2 years ago by j-andrews7
  0

• Come up with real neato name/logo

  #5 opened 2 years ago by j-andrews7
  0