j-andrews7
Senior Bioinformatics Research Scientist at St. Jude Children's Research Hospital
St. Jude Children's Research HospitalMemphis, TN
Pinned Repositories
awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
CRISPRball
An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.
Genotify
A minimal desktop app for easy and convenient gene annotation and lookup.
iBET
interactive Bioinformatics Exploratory Tools
kenpompy
A simple yet comprehensive web scraper for kenpom.com.
OneLinerOmics
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
pytfmpval
Python bindings for the TFM-Pvalue program.
rosewater
Expression-aware gene assignment to ROSE output
STRprofiler
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
j-andrews7's Repositories
j-andrews7/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
j-andrews7/kenpompy
A simple yet comprehensive web scraper for kenpom.com.
j-andrews7/Genotify
A minimal desktop app for easy and convenient gene annotation and lookup.
j-andrews7/CRISPRball
An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.
j-andrews7/OneLinerOmics
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
j-andrews7/pytfmpval
Python bindings for the TFM-Pvalue program.
j-andrews7/EZscRNA
Convenient, high-level functions for EZ(-er) scRNA-seq analysis
j-andrews7/iBET
interactive Bioinformatics Exploratory Tools
j-andrews7/ECLIPSE
An R package for classifying, comparing, and investigating sub-region structural changes of (super) enhancers (or other large domains).
j-andrews7/STRprofiler
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
j-andrews7/celldex
Collection of cell type reference datasets.
j-andrews7/j-andrews7.github.io
Personal Website
j-andrews7/KnowledgeDump
Gotta keep the brain empty to learn more. This is my easily digestible backup.
j-andrews7/rosewater
Expression-aware gene assignment to ROSE output
j-andrews7/GEE
A dittoSeq-based Gene Expression Explorer
j-andrews7/ASOspotter
A simplistic Shiny app for observing mutation data.
j-andrews7/bioconda-recipes
Conda recipes for the bioconda channel.
j-andrews7/CountyAmenitiesExplorer
Code for a website to serve, explore, and visualize US county amenities and cost of living.
j-andrews7/dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
j-andrews7/dittoViz
Color blindness friendly visualization of any data in a data.frame format. Like dittoSeq, but not omics-structure restricted
j-andrews7/dittoVizModules
Flexible yet comprehensive Shiny Modules for common plot types, designed to serve as a base for more complex/specialized modules.
j-andrews7/enrichplot
Visualization of Functional Enrichment Result
j-andrews7/j-andrews7
Personal README
j-andrews7/learngenomics.dev
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
j-andrews7/rustbucket
Dumping ground for rust-backed R functions that I want to zoom.
j-andrews7/shiny_immune_map_results
This is a repository that include the data necessary to build a shiny app to dynamically communicate the results of our immune map paper
j-andrews7/ShinyForResearchersWorkshop
A no-nonsense introduction to Shiny for researchers, clinicians, statisticians, and scientists of all varieties, with a focus on interactive reports and re-usability.
j-andrews7/SingleR
Clone of the Bioconductor repository for the SingleR package.
j-andrews7/tooltime
HURGH HURGH HURGH
j-andrews7/university
Educational materials for the St. Jude Cloud project.