j-andrews7
Senior Bioinformatics Research Scientist at St. Jude Children's Research Hospital
St. Jude Children's Research HospitalMemphis, TN
j-andrews7's Stars
hbctraining/Training-modules
Materials for short, half-day workshops
broadinstitute/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
opendatalab/PDF-Extract-Kit
A Comprehensive Toolkit for High-Quality PDF Content Extraction
althonos/lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
BIMSBbioinfo/VoltRon
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
MikeWLloyd/strprofiler_shiny
Kanaries/GWalkR
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.
RVC-Boss/GPT-SoVITS
1 min voice data can also be used to train a good TTS model! (few shot voice cloning)
dtm2451/dittoViz
Color blindness friendly visualization of any data in a data.frame format. Like dittoSeq, but not omics-structure restricted
lllyasviel/Fooocus
Focus on prompting and generating
ollama/ollama
Get up and running with Llama 3.2, Mistral, Gemma 2, and other large language models.
steven2358/awesome-generative-ai
A curated list of modern Generative Artificial Intelligence projects and services
Bioconductor/workshop-contributions
Repository for managing contributions to workshop.bioconductor.org
ai-collection/ai-collection
The Generative AI Landscape - A Collection of Awesome Generative AI Applications
stjude-biohackathon/CRCminer
xtekky/gpt4free
The official gpt4free repository | various collection of powerful language models
MarioniLab/miloDE
Framework for sensitive DE testing (using neighbourhoods)
crisprVerse/screenCounter
Get barcode counts from functional genomics screens
althonos/pymemesuite
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
loosolab/TF-COMB
Transcription Factor Co-Occurrence using Market Basket analysis
linlabcode/CRC
j-andrews7/CRISPRball
An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.
stjude/learngenomics.dev
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
j-andrews7/iBET
interactive Bioinformatics Exploratory Tools
brentp/tiwih
simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
kanaverse/kana
Single cell analysis in the browser
MalteThodberg/S4-Bioconductor
wmacnair/SampleQC
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
j-andrews7/rosewater
Expression-aware gene assignment to ROSE output
shulantianmayo/dedup
This tool can be used to predict duplicates in peaks as signal versus noise from single-end ChIP-seq data.