j-andrews7/awesome-bioinformatics-benchmarks

Issues

• https://academic.oup.com/bib/article/23/1/bbab417/6400501

  #64 opened a year ago by j-andrews7
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• https://www.biorxiv.org/content/10.1101/2023.12.26.572833v1?rss=1

  #63 opened a year ago by j-andrews7
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• https://www.biorxiv.org/content/10.1101/2023.12.22.573067v1?rss=1

  #62 opened a year ago by j-andrews7
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• https://rnajournal.cshlp.org/content/29/12/1839.long - APAeval - identification and quantification of alternative polyadenylation sites from bulk RNA-seq data

  #61 opened a year ago by SamBryce-Smith
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• https://www.nature.com/articles/s41592-023-01814-1

  #52 opened a year ago by j-andrews7
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• https://www.biorxiv.org/content/10.1101/2023.11.15.564963v1?rss=1

  #57 opened a year ago by j-andrews7
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• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171491/

  #55 opened a year ago by j-andrews7
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• https://elifesciences.org/articles/71994

  #51 opened a year ago by j-andrews7
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• https://www.nature.com/articles/s41467-021-23778-6

  #49 opened a year ago by j-andrews7
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• https://www.nature.com/articles/s41587-022-01336-9

  #58 opened a year ago by j-andrews7
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• https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01972-x

  #53 opened a year ago by j-andrews7
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• https://www.nature.com/articles/s41598-019-46875-5

  #59 opened a year ago by j-andrews7
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• need "live benchmarking" section

  #33 opened a year ago by leipzig
  2

• https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-020-00342-y

  #54 opened a year ago by j-andrews7
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• https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1720-5

  #56 opened a year ago by j-andrews7
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• https://www.future-science.com/doi/10.2144/btn-2019-0105

  #26 opened 2 years ago by j-andrews7
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• https://doi.org/10.1186/s13059-018-1596-9

  #25 opened 2 years ago by j-andrews7
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• https://academic.oup.com/nargab/article/2/3/lqaa052/5877814

  #24 opened 2 years ago by j-andrews7
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• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8565305/

  #47 opened 2 years ago by j-andrews7
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• https://www.biorxiv.org/content/10.1101/2022.05.09.490241v1

  #46 opened 2 years ago by j-andrews7
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• https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02648-4

  #45 opened 3 years ago by j-andrews7
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• https://www.nature.com/articles/s41598-020-76881-x

  #44 opened 3 years ago by j-andrews7
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• https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02552-3

  #43 opened 3 years ago by j-andrews7
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• https://www.sciencedirect.com/science/article/pii/S2001037021004499?via%3Dihub

  #42 opened 3 years ago by j-andrews7
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• https://academic.oup.com/bib/article/22/2/1694/5753843

  #41 opened 3 years ago by j-andrews7
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• GSA

  #39 opened 3 years ago by leipzig
  1

• annotate for github links

  #40 opened 3 years ago by leipzig
  2

• need meta section

  #32 opened 3 years ago by leipzig
  3

• Longread epi

  #36 opened 4 years ago by leipzig
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• https://www.nature.com/articles/s41592-018-0254-1

  #35 opened 4 years ago by j-andrews7
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• Benchmarking small-variant genotyping in polyploids

  #34 opened 4 years ago by leipzig
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• https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03934-3

  #31 opened 4 years ago by leipzig
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• https://www.biorxiv.org/content/biorxiv/early/2021/02/12/2021.02.11.430775.full.pdf

  #30 opened 4 years ago by leipzig
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• Great resource--would be nice to have possibility of comments etc.

  #7 opened 4 years ago by MattBrauer
  1

• https://www.nature.com/articles/s41592-019-0372-4

  #29 opened 4 years ago by j-andrews7
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• https://www.mdpi.com/1422-0067/21/5/1720

  #28 opened 4 years ago by leipzig
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• https://www.nature.com/articles/nmeth.4325

  #27 opened 4 years ago by j-andrews7
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• https://www.biorxiv.org/content/10.1101/2020.01.10.897116v1

  #22 opened 4 years ago by j-andrews7
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• https://academic.oup.com/gigascience/article/8/5/giz039/5488105

  #19 opened 4 years ago by leipzig
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• https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1900-3

  #21 opened 4 years ago by j-andrews7
  1

• https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1308-8

  #23 opened 4 years ago by j-andrews7
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• https://www.nature.com/articles/s41467-017-00050-4

  #20 opened 4 years ago by j-andrews7
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• Accuracy, Robustness and Scalability of Dimensionality Reduction Methods for Single Cell RNAseq Analysis

  #8 opened 5 years ago by aedin
  1