leipzig

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

berrylogo

a better seqLogo

clk

Refactor and test of robustness of Funnell "CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor"

m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

metadata-in-rcr

code and data related to "The Role of Metadata in Reproducible Computational Research"

opensnp

Can we validate published genome-wide association studies of common human phenotypes using the relatively small volunteered data publicly available in OpenSNP? Binderized!

placenta

Reproduction of Leiby et al. placental microbiome paper

SandwichesWithSnakemake

This is a beginner's tutorial to Snakemake

snakemake-example

RNA-Seq Snakemake example with Jekyll homepage creation

leipzig/awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

leipzig/ancestryinformativemarkers

Public AIMs

leipzig/Awesome-Bioinformatics-Benchmarks

A curated list of bioinformatics bench-marking papers and resources.

leipzig/m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

leipzig/biopick2021

some crowd wisdom here

leipzig/biocondastats

compile bioconda usage statistics

leipzig/biostar-tutorials

Code for biostar tutorials - mostly R and Perl

leipzig/replaceScience

WordReplacerII files for turning science articles into something far, far more trivial

leipzig/placenta

Reproduction of Leiby et al. placental microbiome paper

leipzig/annocmpd

Verify clinical trial stage and patent information for compound library entries

leipzig/asciiruler

generate an ascii ruler

leipzig/awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

leipzig/biopick2022

https://twitter.com/search?q=%23biopick2022

leipzig/broadlicenses

all the public licenses for broad repos

leipzig/cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

leipzig/cwltool

Common Workflow Language reference implementation

leipzig/drexelthesistemplate

provided by Mark Boady

leipzig/high_altitude_real_estate

find the home prices of the highest altitude counties

leipzig/nfcore-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

leipzig/opencode_opendata_termcounts

lens.org counts of "open data" and "open code" in the abstract

leipzig/payday

Payday was a web app I created in 2003 for filling out work schedules

leipzig/qualtricssurvey

leipzig/r-base-feedstock

A conda-smithy repository for r-base.

leipzig/remotelessdockernotes

notes on localizing remote dependencies for reproducible docker builds

leipzig/rmats-turbo

leipzig/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

leipzig/SUPPA

SUPPA2: Fast quantification of differential splicing

leipzig/tests_of_robustness_dissertation

Tests of Robustness in Peer Review

leipzig/tox-conda

Make tox cooperate with conda envs

leipzig/vcf-4-population-genomics-team-park