leipzig

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

berrylogo

a better seqLogo

clk

Refactor and test of robustness of Funnell "CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor"

m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

metadata-in-rcr

code and data related to "The Role of Metadata in Reproducible Computational Research"

opensnp

Can we validate published genome-wide association studies of common human phenotypes using the relatively small volunteered data publicly available in OpenSNP? Binderized!

placenta

Reproduction of Leiby et al. placental microbiome paper

SandwichesWithSnakemake

This is a beginner's tutorial to Snakemake

snakemake-example

RNA-Seq Snakemake example with Jekyll homepage creation

leipzig/snakemake-example

RNA-Seq Snakemake example with Jekyll homepage creation

leipzig/biostar-central

BiosStar Q&A

leipzig/datamashupsinr

code and supplemental material to go with O'Reilly's Data Mashups in R

leipzig/mito-conservation-index

leipzig/avocado

Metadata APIs for Django

leipzig/Bio_Mitomaster

Marty Brandon's Bio::Mitomaster perl module

leipzig/bioclojure

Seed of a bioclojure library

leipzig/fastq-tools

Small utilities for working with fastq sequence files.

leipzig/guile-json

A basic JSON parser written in Guile scheme

leipzig/harvest-openmrs

Harvest demo application for OpenMRS

leipzig/khmer

in-memory k-mer counting

leipzig/python.tmbundle

TextMate support for Python

leipzig/PyVCF

A Variant Call Format reader for Python.

leipzig/turk_perspective

leipzig/varify-demo-data

Contains data for reading and analysis by Varify