leipzig
Bioinformatics dev/engr, author. Pipelines, metadata, genomics, reproducible research.
@TileDB-Inc Whitefish, MT
Pinned Repositories
awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
berrylogo
a better seqLogo
clk
Refactor and test of robustness of Funnell "CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor"
m6a
Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
metadata-in-rcr
code and data related to "The Role of Metadata in Reproducible Computational Research"
opensnp
Can we validate published genome-wide association studies of common human phenotypes using the relatively small volunteered data publicly available in OpenSNP? Binderized!
placenta
Reproduction of Leiby et al. placental microbiome paper
SandwichesWithSnakemake
This is a beginner's tutorial to Snakemake
snakemake-example
RNA-Seq Snakemake example with Jekyll homepage creation
leipzig's Repositories
leipzig/berrylogo
a better seqLogo
leipzig/opensnp
Can we validate published genome-wide association studies of common human phenotypes using the relatively small volunteered data publicly available in OpenSNP? Binderized!
leipzig/blast-wrapper
a node.js webservice wrapper for pairwise BLAST
leipzig/awesome-R
A curated list of awesome R packages, frameworks and software.
leipzig/ML4BFX
Machine Learning for Bioinformatics Coursework
leipzig/conda-recipes
build and test recipes for conda
leipzig/consent_ontology
applying ICO to actual consent forms
leipzig/dashcam_ontology
An ontology to describe vehicle accidents filmed on dashboard video cameras
leipzig/docker-images
Repository of Docker images created by Continuum Analytics
leipzig/events
Materials related to events I might attend, and to talks I am giving
leipzig/fcs_api
node api to interface with the fcs database and run reports and stuff for CytoVas
leipzig/fcs_upbrowse
CytoVas fcs uploader and file browser
leipzig/fcsparser
a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1
leipzig/flowCore
Core flow infrastructure
leipzig/flowFP
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/flowFP.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=flowFP.
leipzig/flowFramePlus
flowFramePlus wraps a flowFrame with normalization and scaling attributes and adds metadata tracking
leipzig/Intro2DS_demo1
Jupyter Demo 1 for INFO103_900
leipzig/Intro2DS_demo3
leipzig/Intro2DS_demo4
leipzig/Intro2DS_demo5
leipzig/leipzig.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
leipzig/mcmanus_ant1
RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"
leipzig/mie
Mie theory for electromagnetic scattering by spherical objects
leipzig/mitomap_concordance
a whirlwind tour through the exiting world of mitochondrial mutations
leipzig/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
leipzig/PhyloTree_lib
Phython library to manipulate excel files from PhyloTree.org
leipzig/sissyfight
Revival of the 1999 multiplayer game SiSSYFiGHT 2000, rewritten with node.js, SockJS, and CreateJS HTML5 library
leipzig/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
leipzig/titus-blog
My blog.
leipzig/vcf2db
create a gemini-compatible database from a VCF