Pinned Repositories
pegp
PEGP (protein evolutionary genomics pipeline). A software tool for protein homology search, phylogenetic tree construction with annotations (taxonomy, domain architecture, genome context), and reconstruction of phyletic pattern with identification of paralogs
repr-genome-download
Utility scripts to download all complete, latest, and representative RefSeq genomes with one representative per taxonomic rank of interest according to NCBI Taxonomy database.
tree-annotation
R scripts to annotate protein phylogenetic trees with data, annotate species trees with protein phyletic patterns and plot
stovc's Repositories
stovc/tree-annotation
R scripts to annotate protein phylogenetic trees with data, annotate species trees with protein phyletic patterns and plot
stovc/pegp
PEGP (protein evolutionary genomics pipeline). A software tool for protein homology search, phylogenetic tree construction with annotations (taxonomy, domain architecture, genome context), and reconstruction of phyletic pattern with identification of paralogs
stovc/repr-genome-download
Utility scripts to download all complete, latest, and representative RefSeq genomes with one representative per taxonomic rank of interest according to NCBI Taxonomy database.