Pinned Repositories
cask
Classification of Ambivalent Sequences using K-mers
charseq-pipelines
Pipelines to process raw ChAR-seq data
charseq_dynamics_paper
Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"
chartools
Suite of tools to work with ChAR-seq data
compgenomics_minicourse
Computational Genomics Minicourse
DiMeLo
Scripts for analysis of DiMeLo data from in vitro and in situ DiMeLo-seq
flypipe
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
tagtools
Multimapper aware annotation of alignments
xenla-cen-dna-paper
snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA
Straight Lab's Repositories
straightlab/cask
Classification of Ambivalent Sequences using K-mers
straightlab/charseq_dynamics_paper
Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"
straightlab/charseq-pipelines
Pipelines to process raw ChAR-seq data
straightlab/chartools
Suite of tools to work with ChAR-seq data
straightlab/flypipe
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
straightlab/compgenomics_minicourse
Computational Genomics Minicourse
straightlab/DiMeLo
Scripts for analysis of DiMeLo data from in vitro and in situ DiMeLo-seq
straightlab/tagtools
Multimapper aware annotation of alignments
straightlab/xenla-cen-dna-paper
snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA