Straight Lab

Pinned Repositories

cask
Classification of Ambivalent Sequences using K-mers
Language:Python30
charseq-pipelines
Pipelines to process raw ChAR-seq data
Language:Jupyter Notebook11
chartools
Suite of tools to work with ChAR-seq data
Language:Python10
compgenomics_minicourse
Computational Genomics Minicourse
Language:Python0 3 01
DiMeLo
Scripts for analysis of DiMeLo data from in vitro and in situ DiMeLo-seq
Language:Jupyter Notebook00
flypipe
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
Language:Shell1 4 21
tagtools
Multimapper aware annotation of alignments
Language:Python00
xenla-cen-dna-paper
snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA
Language:Python0 3 20

Straight Lab's Repositories

straightlab/cask
Classification of Ambivalent Sequences using K-mers
Language:Python30
straightlab/charseq_dynamics_paper
Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"
Language:HTML3
straightlab/charseq-pipelines
Pipelines to process raw ChAR-seq data
Language:Jupyter Notebook11
straightlab/chartools
Suite of tools to work with ChAR-seq data
Language:Python10
straightlab/flypipe
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
Language:Shell1 4 21
straightlab/compgenomics_minicourse
Computational Genomics Minicourse
Language:Python0 3 01
straightlab/DiMeLo
Scripts for analysis of DiMeLo data from in vitro and in situ DiMeLo-seq
Language:Jupyter Notebook00
straightlab/tagtools
Multimapper aware annotation of alignments
Language:Python00
straightlab/xenla-cen-dna-paper
snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA
Language:Python0 3 20