straightlab/charseq_dynamics_paper

Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"

charseq_dynamics_paper

Core computations

• Differential expression and chromatin association
• Delocalization scores with GLM. Goes with Associated visualization of the GLM fit

Visualization code

• Chromatin associated RNA diversity
• Chromatin association scores
• Delocalization scores
• Differential expression in chromatin associated RNAs
• Contactome Dynamics
• Comparison to model
• caRNA-gene interactome