strambc
I am cell biologist by training. I am passionate about open science and data management and sharing. I am a CZI Imaging Scientist and I have been at the Program
UMass Medical Schoolhttps://profiles.umassmed.edu/display/132167
Pinned Repositories
MIAPTE
Minimum Information About Particle Tracking Experiments (MIAPTE) guidelines
Omega
Open Microscopy Environment inteGrated Analysis (OMEGA) is a cross-platform data management, analysis and visualization system, for particle tracking data with particular emphasis on results from viral and vesicular trafficking experiments.
OmegaOld
cs_test-docs
data-models
Schema.org Data Models for HTAN
napari
napari: a fast, interactive, multi-dimensional image viewer for python
qupath-docs
QuPath documentation
4DNMicroscopyMetadataTool
A interactive and intuitive tool for the collection and reporting of microscopy metadata
NBOMicroscopyMetadataSpecs
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
W-IDM_OmeroDataWriter
This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
strambc's Repositories
strambc/cs_test-docs
strambc/data-models
Schema.org Data Models for HTAN
strambc/napari
napari: a fast, interactive, multi-dimensional image viewer for python
strambc/qupath-docs
QuPath documentation
strambc/qupath.github.io
GitHub pages site
strambc/skills-review-pull-requests
My clone repository
strambc/Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes