Pinned Repositories
compPopGenWorkshop2019_docs
Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.
compvar-workshop-docs
Documentation for the 2018 Genome Analysis workshop I gave in Helsinki
exp_dat_reading_group_2021
Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data
GAworkshop
Genome Analysis Workshop (Jena 2016) material
haskell-cli-example
msmc
Implementation of the multiple sequential markovian coalescent
msmc-tools
Tools and Utilities for msmc and msmc2
msmc2
rarecoal
Implementation of the rare allele coalescent to infer population phylogenies
sequenceTools
stschiff's Repositories
stschiff/GAworkshop
Genome Analysis Workshop (Jena 2016) material
stschiff/compPopGenWorkshop2019_docs
Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.
stschiff/haskell-cli-example
stschiff/compvar-workshop-docs
Documentation for the 2018 Genome Analysis workshop I gave in Helsinki
stschiff/bcftools
This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib
stschiff/hfit
stschiff/BigSquirrel
test repo for playing around
stschiff/ChristophKoala
stschiff/Covid19_modelling_old
Some modelling on epidemiological dynamics of COVID-19
stschiff/d.tmbundle
TextMate support for D
stschiff/dotvim-old
.vimrc configuration files and plugins in .vim
stschiff/freqSum2eigenstrat
a small conversion tool from freqsum to eigenstrat format
stschiff/Haskell-Turtle-Library
Shell programming, Haskell style
stschiff/HGDP_PopStruct_Exercise
A classroom exercise using HGDP SNP data to introduce population structure concepts
stschiff/mathematica-mcmc
Mathematica Markov chain Monte Carlo
stschiff/MathematicaStan
A Mathematica package to interact with CmdStan
stschiff/mergeAndClipFastq
stschiff/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
stschiff/phobos
The standard library of the D programming language
stschiff/pipes-ordered-zip
A Haskell package for ordered zipping of two Pipes-Producers
stschiff/q-stats-error-prop
A little writeup on error propagation for Q-statistics from Keinan et al. 2009
stschiff/rarecoal-old
stschiff/rarecoal-report
stschiff/RAStools
stschiff/RelativeAlleleSharing
Scripts to calculate Relative Allele Sharing (RAS) between individuals/populations from a FreqSum file.
stschiff/singleLocusSim
simple single Locus Wright Fisher simulator
stschiff/stackage
"Stable Hackage": vetted consistent packages from Hackage
stschiff/stschiff.github.io-old
My github website
stschiff/tman
stschiff/w3id.org
Website source code for w3id.org