suiweikang

suiweikang's Stars

• hzi-bifo/traitar

  From genomes to phenotypes: Traitar, the microbial trait analyzer

  Language:Python5515

• bjtully/BioData

  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

  Language:Python6837

• laijiangshan/rdacca.hp

  rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis

  Language:R176

• karkman/crAssphage_project

  Source code for the crAssphage project

  Language:TeX4542

• atcribb/Ediacaran-Cambrian-OPD-Controls

  Model, simulation, and plotting scripts and output files for Cribb et al. "Ediacaran-Cambrian bioturbation did not oxygenate sediments in shallow marine benthic ecosystems"

  Language:R1

• jenniferlu717/Bracken

  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

  Language:C++28250

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++702269

• martin-steinegger/kraken-protocol

  Metagenome analysis using the Kraken software suite

  Language:Jupyter Notebook277

• BenLangmead/aws-indexes

  Catalog of genomic indexes freely available from public clouds

  Language:Python554

• KasperSkytte/ampvis2

  Tools for visualising microbial community amplicon data

  Language:R6723

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python29184

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell25573

• biobakery/MetaPhlAn2

  Language:Python298

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell389189

• YongxinLiu/EasyMetagenome

  Easy Metagenome Pipeline

  Language:HTML229114

• xinsun12/AnaerobicNitriteOxidation

  Language:MATLAB1

• Mengting-Maggie-Yuan/warming-network-complexity-stability

  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"

  Language:R4036

• jbisanz/qiime2R

  Import qiime2 artifacts to R

  Language:HTML15650

• 47h2o/studyR

  A note of studying R programming language

  Language:R115

• hannet91/ggcor

  Extended tools for correlation analysis and visualization.

  3732

• dgiovannelli/SubductCR_16S-diversity

  Data and analysis file of the Biology Meets Subduction paper related to the 16S rRNA Bacterial diversity along the subduction zone of Costa Rica

  Language:R33

• ucassee/Challenger-Deep-Microbes

  Language:R75

• Tong-Chen/ImageGP

  Language:R2010

• ruizhao087/Reaction-Transport-Model-for-marine-sediments

  Language:R14