sujaypatil96

sheet2linkml

Python package for conversion of Google Sheet to LinkML for CCDH

linkml

Linked Open Data Modeling Language

linkml-runtime

Runtime support for linkml generated models

data_curator

Data and metadata ingress app

schematic

Package for biomedical data model and metadata ingress management

covid19-mr-analysis

Mendelian Randomization Analysis of COVID19-HGI data

Flight-arrival-prediction

Flight arrival and delay time prediction.

HTAN_data_curator

Data Ingest Shiny App

rnaseq-pipeline

Bioinformatics analysis of RNAseq data.

sujaypatil96/anndata

Annotated data.

sujaypatil96/awesome-synapse

List of repositories here that utilizes the Synapse clients

sujaypatil96/bbop-sandbox

A sandbox to test all things LBNL/BBOP.

sujaypatil96/berkeleybop.github.io

Homepages for the Berkeley BOP.

sujaypatil96/biolink-model

Schema and generated objects for biolink data model and upper ontology

sujaypatil96/ccdhmodel

CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)

sujaypatil96/clinical-genomic-db-crud

System to demonstrate CRUD operations on a MongoDB backend using PHP. The schema used to specify the Mongo database is that of a typical hybrid clinical/genomic database.

sujaypatil96/example-data

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.

sujaypatil96/freeCodeCamp

freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

sujaypatil96/ga4gh-va

LinkML schema for GA4GH variant annotation

sujaypatil96/ga4gh-va-schema

Data model for variant annotation in the GA4GH consortium.

sujaypatil96/go-site

A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

sujaypatil96/jdvt

JSON Data Visualization and Transformation Tool

sujaypatil96/jsonasobj

Extension to the python json library that represents JSON as first class python objects.

sujaypatil96/linkml

Linked Open Data Modeling Language

sujaypatil96/linkml-round-trips

sujaypatil96/linkml-tutorial

sujaypatil96/linkml.github.io

Website/splash page for main LinkML project

sujaypatil96/mixs

Minimum Information about any (X) Sequence” (MIxS) specification

sujaypatil96/noblis-imaged-pipeline

Steps in the Noblis IMAGED pipeline

sujaypatil96/nwb-dev-days-linkml-hdmf

One stop shop for all resources (slides, scripts, tutorials, etc.) used at the LinkML / NWB HDMF workshop

sujaypatil96/python-flask-enrollment-app

An enrollment application created using the Flask framework in Python.

sujaypatil96/sample-annotator

NMDC Sample Annotator

sujaypatil96/schemasheets

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

sujaypatil96/sujaypatil96

Config files for my GitHub profile.

sujaypatil96/sujaypatil96.github.io

Chronicling the daily lives of anxious minds

sujaypatil96/synapsePythonClient

Programmatic interface to Synapse services for Python

sujaypatil96/SynapseShinyApp

Basic structure of a R Shiny application for use on Synapse

sujaypatil96/template-configurator

Configuration utility for generating linkml models in the linkml-model-template

sujaypatil96/w3id.org

Website source code for w3id.org.