Pinned Repositories
HLA-HED
A python script to calculate the HLA Evolutionary Divergence (HED) Score.
Sun_bio
cutadapt
cutadapt removes adapter sequences from sequencing reads
free-programming-books
:books: Freely available programming books
awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-R
A curated list of awesome R packages, frameworks and software.
bam-readcount
count DNA sequence reads in BAM files
bio_scripts
Practical, reusable scripts for bioinformatics
biom-format
The Biological Observation Matrix (BIOM) Format Project
sunhuaibo's Repositories
sunhuaibo/Sun_bio
sunhuaibo/gofaidx
sunhuaibo/HLA-HED
A python script to calculate the HLA Evolutionary Divergence (HED) Score.
sunhuaibo/R
sunhuaibo/EasyFuse
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
sunhuaibo/python_collect
sunhuaibo/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sunhuaibo/Python
sunhuaibo/chinese-poetry
The most comprehensive database of Chinese poetry 🧶最全中华古诗词数据库, 唐宋两朝近一万四千古诗人, 接近5.5万首唐诗加26万宋诗. 两宋时期1564位词人，21050首词。
sunhuaibo/long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
sunhuaibo/cnvkit
Copy number variant detection from targeted DNA sequencing
sunhuaibo/yangt_sbb
sunhuaibo/ggsignif
Easily add significance brackets to your ggplots
sunhuaibo/tidygenomics
Tidy Verbs for Dealing with Genomic Data Frames
sunhuaibo/awesome-R
A curated list of awesome R packages, frameworks and software.
sunhuaibo/centrifuge
Classifier for metagenomic sequences
sunhuaibo/factoextra
Extract and Visualize the Results of Multivariate Data Analyses
sunhuaibo/blasr
BLASR: The PacBio® long read aligner
sunhuaibo/ngmlr
Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome with a focus on reads that span structural variations
sunhuaibo/vsearch
Versatile open-source tool for metagenomics
sunhuaibo/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
sunhuaibo/gtz
A high performance and compression ratio compressor, powered by GTXLab of Genetalks.
sunhuaibo/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sunhuaibo/pyfaidx
Efficient pythonic random access to fasta subsequences
sunhuaibo/RNA-seq-analysis
RNAseq analysis notes from Tommy Tang
sunhuaibo/awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
sunhuaibo/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
sunhuaibo/DNA-seq-analysis
my notes on whole exome and whole genome sequencing analysis
sunhuaibo/bam-readcount
count DNA sequence reads in BAM files
sunhuaibo/DNA-methylation-analysis
my notes on DNA methylation analysis (arrays and sequencing data)