sunitj
Comp. biologist and data engineer. I study complex microbial communities and build pipelines/algorithms for their analysis. @czbiohub @FischbachLab
@czbiohub San Francisco
Pinned Repositories
nf-ninjamap2
Complete restructuring of the original ninjamap code
nf-reads-profiler
Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
aws-serverless-website-workshop
Code and walkthrough labs to set up a serverless web application for the Wild Rydes Workshop
bioconda-recipes
Conda recipes for the bioconda channel.
feeling-responsive
»Feeling Responsive« is a flexible theme for Jekyll built on Foundation framework. Have a look at...
Housing
*Trying to* explore trends in the local housing market using publicly available data.
scholar
Adding google scholar citations to google sites.
SuperMoM
This repo hosts code for the Super awesome Meta*omics Miner tool. WARNING: The code is no where near stable. The documentation is more like scribbles of the ideas in my head and probably won't make any sense unless you get in touch. Please do get in touch if you were intrigued.
Binning
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
sunitj's Repositories
sunitj/scholar
Adding google scholar citations to google sites.
sunitj/aws-serverless-website-workshop
Code and walkthrough labs to set up a serverless web application for the Wild Rydes Workshop
sunitj/bioconda-recipes
Conda recipes for the bioconda channel.
sunitj/feeling-responsive
»Feeling Responsive« is a flexible theme for Jekyll built on Foundation framework. Have a look at...
sunitj/frontend-nanodegree-resume
sunitj/Housing
*Trying to* explore trends in the local housing market using publicly available data.
sunitj/SuperMoM
This repo hosts code for the Super awesome Meta*omics Miner tool. WARNING: The code is no where near stable. The documentation is more like scribbles of the ideas in my head and probably won't make any sense unless you get in touch. Please do get in touch if you were intrigued.
sunitj/LatentStrainAnalysis
Partitioning and analysis methods for large, complex sequence datasets
sunitj/omicsGraph
This is a test/practice project based on Nicole White's "Graphs_R_Cool" repository: https://github.com/nicolewhite/graphs_r_cool
sunitj/pandoc_resume
The Markdown Resume
sunitj/paper_transposonLibrary
sunitj/RNeo4j
Neo4j Driver for R.
sunitj/sandbox
This is a place where I test/figure out stuff and where projects live before they're mature enough for the public.
sunitj/sunitj
Me!!
sunitj/sunitj.github.io
sunitj/TeachingMaterial
RNA-seq data analysis practical
sunitj/xslt-sandbox
My xslt sandbox