/SuperMoM

This repo hosts code for the Super awesome Meta*omics Miner tool. WARNING: The code is no where near stable. The documentation is more like scribbles of the ideas in my head and probably won't make any sense unless you get in touch. Please do get in touch if you were intrigued.

Primary LanguagePerlMIT LicenseMIT

SuperMoM

This repo hosts the Super (awesome) Meta-omics Miner tool.

What is SuperMoM?

Summary

Suite of scripts (mostly in R and Perl) to parse, load and analyze Meta*omics data using a Graph database (Neo4j).

===== #WARNING:

  • The code is no where near a stable release and is missing substantial portions of the suite.
  • The documentation is more like scribbles of the ideas in my head and probably won't make any sense unless you get in touch.
  • Please do get in touch if you were intrigued.

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Dependencies

This version of SuperMoM has been tested with the following dependencies on systems with a 64-bit architecture running on RHEL6, Mac OS X 10.9 and above.

Neo4j

  • Version: 2.1.7

Perl

  • Version: 5.18.2
  • Packages:
    • Bio::Perl
    • REST::Neo4p
    • Term::ProgressBar

R

  • Version 3.1.2
  • Packages:
    • RNeo4j
    • igraph
    • ggplot2
    • googleVis

Contact

Sunit Jain

sunitj [at] umich [dot] edu

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