sunnnymskang

sunnnymskang's Stars

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.7k319

• ryerkerk/aws-batch-python-tutorial

  A tutorial for running python scripts using AWS Batch

  Language:Shell6318

• pb3lab/ibm3202

  Google Colab Tutorials for IBM3202

  Language:Jupyter Notebook24082

• carlocamilloni/Structural-Bioinformatics

  This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202

  Language:Jupyter Notebook5010

• DrrDom/rdkit-scripts

  rdkit scripts making life easier

  Language:Python5724

• igashov/DiffLinker

  DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design

  Language:Python29240

• a-r-j/graphein

  Protein Graph Library

  Language:Jupyter Notebook1k131

• deep-diver/mlops-hf-tf-vision-models

  MLOps for Vision Models (TensorFlow) from 🤗 Transformers with TensorFlow Extended (TFX)

  Language:Jupyter Notebook11518

• dockstring/dataset

  Code to help download and extract the dockstring dataset.

  Language:Jupyter Notebook41

• dockstring/dockstring

  A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.

  Language:Python15330

• dockstring/benchmarks

  Official repository for dockstring-based benchmarks.

  Language:Jupyter Notebook61

• QingyuLiaib/PLA-MoRe

  Language:Python72

• pablo-arantes/making-it-rain

  Cloud-based molecular simulations for everyone

  Language:Rich Text Format382104

• dauparas/ProteinMPNN

  Code for the ProteinMPNN paper

  Language:Jupyter Notebook941285

• NVIDIA/DeepLearningExamples

  State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

  Language:Jupyter Notebook13.2k3.2k

• dtischer/trdesign-motif

  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29.402743v1.abstract

  Language:Python163

• RosettaCommons/RFDesign

  Protein hallucination and inpainting with RoseTTAFold

  Language:Python23467

• sokrypton/ColabDesign

  Making Protein Design accessible to all via Google Colab!

  Language:Python552128

• lhm30/PIDGINv2

  PIDGIN Version 2: Prediction IncluDinG INactivity: Version 2 (LEGACY VERSION)

  Language:Python308

• lhm30/PIDGIN

  Prediction IncluDinG INactives (**OLD VERSION**) NEW VERSION: https://github.com/lhm30/PIDGINv2)

  Language:Python132

• gjoni/trDesign

  trRosetta for protein design

  Language:Jupyter Notebook17135

• GoogleCloudPlatform/keras-idiomatic-programmer

  Books, Presentations, Workshops, Notebook Labs, and Model Zoo for Software Engineers and Data Scientists wanting to learn the TF.Keras Machine Learning framework

  Language:Jupyter Notebook809281

• wandb/edu

  Educational materials on deep learning by Weights & Biases

  Language:Jupyter Notebook499237

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.7k512

• iwatobipen/py4chemoinformatics

  Python for chemoinformatics

  Language:Jupyter Notebook5018

• leonweber/biomuppet

  Language:Python5

• PDBeurope/pdbe-api-training

  Interactive Python notebooks for PDBe API training

  Language:Jupyter Notebook4418

• Fung-Lab/MatDeepLearn

  MatDeepLearn, package for graph neural networks in materials chemistry

  Language:Python16743

• DeepGraphLearning/torchdrug

  A powerful and flexible machine learning platform for drug discovery

  Language:Python1.4k199

• https-deeplearning-ai/tensorflow-2-public

  Language:Jupyter Notebook347945