Pinned Repositories
angsd
Program for analysing NGS data.
ASCEND
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
foldSFS-cpp
Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.
itara
Repository of various functions and scripts.
McSwan
Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.
Probabilistic-Neanderthal-admixture-dating
Method for estimating the age of admixture using a single diploid sample and genotype likelihoods.
qna
qna_data
vanaprabhava
Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.
tskit
Population-scale genomics
sunyatin's Repositories
sunyatin/ASCEND
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
sunyatin/Probabilistic-Neanderthal-admixture-dating
Method for estimating the age of admixture using a single diploid sample and genotype likelihoods.
sunyatin/McSwan
Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.
sunyatin/angsd
Program for analysing NGS data.
sunyatin/foldSFS-cpp
Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.
sunyatin/itara
Repository of various functions and scripts.
sunyatin/qna
sunyatin/qna_data
sunyatin/vanaprabhava
Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.