/angsd

Program for analysing NGS data.

Primary LanguageC++

Build Status angsd:

Program for analysing NGS data.

Installation:

git clone https://github.com/samtools/htslib.git; git clone https://github.com/angsd/angsd.git; cd angsd;make HTSDIR=../htslib

Notes

  • I've switched over to using htslib for parsing single reads (to allow for CRAM reading, while avoid having to write my own CRAM parser). I'm still using my own readpools. Users should therefore also download and install htslib.
  • http://www.popgen.dk/angsd/

Program has a paper

http://www.biomedcentral.com/1471-2105/15/356/abstract