Pinned Repositories
AMOR
Abundance Matrix Operations in R
AMORglmnet
glmnet model on Dataset objects
delta_statistic
Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.
grins
Code for the manuscript describing discovery and distribution of GRINS in bacteria.
HMVAR
Human Microbiome Variant Analysis in R
pbi
Microbiome analysis for phosphate-defense interaction
PGCA
Plate Growth Curve Analysis
RosetteDetector
Rosette Detection with SVM
scip_barplot
Workshop materials for SFSU SCIP 2022.
wheelP
Designing synthetic bacterial communities for predictable plant phenotypes
surh's Repositories
surh/sutilspy
Sur utilities in Python 3
surh/selection
surh/delta_statistic
Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.
surh/mBIMBAM
A BIMBAM fork
surh/unix_configs
Common configuration files that I use in different UNIX systems
surh/RosetteDetector
Rosette Detection with SVM
surh/mytestpackage
surh/combinatorixData
Data for combinatorix package
surh/bugwas
Locus and lineage tests for bacterial GWAS
surh/combinatorix
Combinatoric bacterial communities to modulate plant phenotypes
surh/registry.gimp.org_static
A wget backup of http://registry.gimp.org
surh/rsutiles
R utilities by Sur
surh/SimBac
Source code for SimBac, a bacterial genome simulator
surh/microdynamics
Differential equations for modelling microbe-microbe dynamics
surh/gene_enrichments
surh/PGCA
Plate Growth Curve Analysis
surh/roxygen2Comment
An Rstudio addin for adding and remove roygen2 comment
surh/AMORglmnet
glmnet model on Dataset objects
surh/PotCropper