Survival Analysis Group LUMC
A Github site for projects from the Survival Analysis Group at Leiden University Medical Center (LUMC, the Netherlands).
Pinned Repositories
CauseSpecCovarMI
Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)
CovidPredictimands
Code repository for the paper "The disconnect between development and intended use of clinical prediction models for Covid-19: a systematic review and real-world data illustration"
DynamicPrediction-book
Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)
FG-TotalFailureProbability
Code and results of Section 4 of the paper "Fine-Gray subdistribution hazard models to simultaneously estimate the absolute risk of different event types: cumulative total failure probability may exceed 1", by Peter Austin, Ewout Steyerberg & Hein Putter
FineGrayDGM
Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (2024, JRSS-A)
FrailtyTutorial
R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1177/0962280220921889.
Landmarking2.0
Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen
ReviewHaemaMissing
Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)
Validation_Under_Interventions
Performance evaluation of predictions under interventions using longitudinal observational data
ValidationCompRisks
Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)
Survival Analysis Group LUMC's Repositories
survival-lumc/ValidationCompRisks
Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)
survival-lumc/FrailtyTutorial
R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1177/0962280220921889.
survival-lumc/Landmarking2.0
Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen
survival-lumc/FG-TotalFailureProbability
Code and results of Section 4 of the paper "Fine-Gray subdistribution hazard models to simultaneously estimate the absolute risk of different event types: cumulative total failure probability may exceed 1", by Peter Austin, Ewout Steyerberg & Hein Putter
survival-lumc/Validation_Under_Interventions
Performance evaluation of predictions under interventions using longitudinal observational data
survival-lumc/CauseSpecCovarMI
Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)
survival-lumc/CovidPredictimands
Code repository for the paper "The disconnect between development and intended use of clinical prediction models for Covid-19: a systematic review and real-world data illustration"
survival-lumc/DynamicPrediction-book
Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)
survival-lumc/FineGrayDGM
Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (2024, JRSS-A)
survival-lumc/ImmuneReconstJM
Code and supplementary materials for the manuscript "Joint models quantify associations between T-cell kinetics and allo-immunological events after allogeneic stem cell transplantation and subsequent donor lymphocyte infusion" (2023, Frontiers in Immunology)
survival-lumc/ReviewHaemaMissing
Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)
survival-lumc/AdjCuminc
Performing covariate adjustment on cumulative incidence curves for competing risks data, and comparing various approaches to covariate adjustment via simulation.
survival-lumc/Benchmarking
Benchmarking survival outcomes: A funnel plot for survival data
survival-lumc/FineGrayCovarMI
Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (submitted)
survival-lumc/AdvancedSurvival-course
Landing site for 2024 course "Advanced Survival Analysis", given in Leiden (the Netherlands).
survival-lumc/CausalMultistate
Code accompanying the manuscript "Extending multistate models with g-computation to evaluate treatment delay"