updating
(1) Download MULTICOM package (short path is recommended)
cd /home/MULTICOM_TS
git clone https://github.com/multicom-toolbox/multicom
cd multicom
(2) Download the database (required)
wget MULTICOM_db_tools.tar.gz (contact us)
(3) Configure MULTICOM system (required)
a. edit configure.pl
b. set the path of variable '$multicom_db_tools_dir' for multicom databases and tools (i.e., /home/MULTICOM_db_tools/).
c. save configure.pl
perl configure.pl
(4) Mannally configure tools (required)
cd installation/MULTICOM_manually_install_files
# one-time installation. If the path is same as before, the configurations can be skipped.
$ sh ./P1_install_boost.sh
(** may take ~20 min)
$ sh ./P2_install_OpenBlas.sh
(** take ~1 min)
$ sh ./P3_install_freecontact.sh
(** take ~1 min)
$ sh ./P4_install_scwrl4.sh
(** take ~1 min, after running this shell file, the installation path for scwrl will be reported in the second line.
Please copy the provided path for scwrl installation)
$ sh ./P5_python_virtual.sh
(** take ~1 min)
(5) Testing the MULTICOM tools (recommended)
cd installation/MULTICOM_test_codes
ls
sh T1-run-pspro2.sh
sh T2-run-SCRATCH.sh
sh T4-run-dncon2.sh
sh T5-run-modeller9.16.sh
sh T7-run-hhsearch.sh
sh T11-run-hhsuite.sh
sh T14-run-psiblast.sh
sh T15-run-compass.sh
sh T17-run-prc.sh
sh T20-run-raptorx.sh
sh T27-run-confold.sh
sh T28-run-unicon3d.sh
(6) Run MULTICOM for structure predicton
Usage:
$ sh bin/run_multicom.sh <file name>.fasta <output folder>
Example:
$ sh bin/run_multicom.sh examples/T0993s2.fasta test_out/T0993s2_out