Sydney Cytometry
Sydney Cytometry is the Advanced Cytometry Facility established through a collaboration of the Centenary Institute and the University of Sydney
Sydney, Australia
Pinned Repositories
Adaptable-RtSNE
A script to utilise the flexibility of a modifiable RtSNE package.
AutoGraph
A looped script to create a series of group comparison bar graphs or dot plots
CAPX
Cytometry analysis pipeline for large and complex datasets (CAPX) (beta)
Chronoclust
CSV-to-FCS
A short script for converting .csv file data into an .fcs file, and vise versa.
cytofWorkflow
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cytofWorkflow.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cytofWorkflow
CytoTools
Useful small scripts for cytometry data management
Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
spillover-spreading-calculator
A brief script for calculating spillover-spreading error from one fluorophore into a non-target detector
tSNEplots
An R script for automatically creating coloured tSNE plots
Sydney Cytometry's Repositories
sydneycytometry/CSV-to-FCS
A short script for converting .csv file data into an .fcs file, and vise versa.
sydneycytometry/tSNEplots
An R script for automatically creating coloured tSNE plots
sydneycytometry/CAPX
Cytometry analysis pipeline for large and complex datasets (CAPX) (beta)
sydneycytometry/CytoTools
Useful small scripts for cytometry data management
sydneycytometry/AutoGraph
A looped script to create a series of group comparison bar graphs or dot plots
sydneycytometry/Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
sydneycytometry/cytofWorkflow
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cytofWorkflow.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cytofWorkflow
sydneycytometry/spillover-spreading-calculator
A brief script for calculating spillover-spreading error from one fluorophore into a non-target detector
sydneycytometry/Adaptable-RtSNE
A script to utilise the flexibility of a modifiable RtSNE package.
sydneycytometry/CATALYST
Cytometry dATa anALYsis Tools
sydneycytometry/Chronoclust
sydneycytometry/IMC-ROI-annotation
An R script to facilitate the annotation and modification of Imaging Mass Cytometry (IMC) ROI data