szufan

szufan's Stars

• snake-flu/jclusterfunk

  Language:Java3

• sdellicour/sars-cov-2_liege

  Language:R21

• eveskew/stats_eco_evo_spring2020

  Course repository for Columbia University's EEEB UN3005/GR5005 (spring 2020)

  Language:R33

• eveskew/rat_invasion

  Code, data, and figures for a study of rodent interactions within the Lassa virus system

  Language:R1

• 54481andrew/pathogen-spillover-forecast

  This repository contains code for a pathogen forecasting framework. Here, the framework is applied to Lassa virus, the causative agent of Lassa fever in humans.

  Language:R2

• SimonLoriereLab/sarscov2_Oct2023

  Language:Nextflow11

• bensobkowiak/cov2clusters

  Stable clustering of SARS-CoV-2 sequences from phylogenetic trees

  Language:R31

• pha4ge/pipeline-resources

  Bioinformatics Pipeline and Visualization resources

  5227

• DHSProgram/DHS-Indicators-R

  R code to produce Demographic and Health Survey Indicators

  Language:R7763

• pha4ge/Wastewater_Contextual_Data_Specification

  A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.

  3

• bioinfo-training/guidelines

  3

• cidgoh/DataHarmonizer

  A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

  Language:JavaScript9024

• giffordlabcvr/Flavivirus-GLUE

  A GLUE project for comparative genomic analysis of flaviviruses

  Language:JavaScript1

• TGenNorth/ASAP

  Amplicon Sequencing Analysis Pipeline

  Language:XSLT144

• drtamermansour/nu-ngs01

  NGS-1 Data analysis course

  Language:R3639

• blab/zika-usvi

  Evolutionary analysis of USVI Zika epidemic

  Language:Jupyter Notebook21

• trvrb/sismid

  Pathogen evolution, selection and immunity

  Language:Jupyter Notebook4424

• jbloomlab/CoV_229E_antigenic_drift

  Language:Jupyter Notebook52

• ElisabethRoesch/Perspective_Julia_for_Biologists

  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I

  936

• mayooear/gpt4-pdf-chatbot-langchain

  GPT4 & LangChain Chatbot for large PDF docs

  Language:TypeScript14.8k3k

• Pseudomanifold/latex-mimosis

  A minimal & modern LaTeX template for your (bachelor's | master's | doctoral) thesis

  Language:TeX1.1k125

• microsoft/gather

  Spit shine for Jupyter notebooks 🧽✨

  Language:Jupyter Notebook53038

• toryn13/Teaching-metagenomics-in-Colab

  Examples of analyzing microbiome data in Goolge Colab

  Language:Jupyter Notebook4

• alrobles/PNAS-Wildlife-susceptibility-to-infectious-diseases-at-global-scales

  Scripts to run results in PNAS

  Language:R21

• broadinstitute/genomics-in-the-cloud

  Source code and related materials for the O'Reilly book

  Language:Jupyter Notebook8926

• BPA-CSIRO-Workshops/btp-workshop-ngs

  Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS

  Language:TeX1010

• jaantollander/Markdown-Templates

  Templates for creating scientific, academic and technical documents using Markdown and Pandoc that support equations, code blocks, citations, Unicode symbols and vector graphics.

  Language:HTML19054

• mauhai/awesome-jupyterlab

  A curated list of awesome JupyterLab extensions and resources

  2.5k155

• IKIM-Essen/sars-cov-2-workflow-comparison

  A collection of workflows for analyzing the SARS-CoV-2 genome.

  814

• dpbisme/CV_rmarkdown

  An R markdown template for making a great looking CV

  Language:TeX21