t-neumann
Lead Bioinformatician / Data Analyst / Space exploration enthusiast
@IMPIMBA @ZuberLab @ObenaufLab Vienna
Pinned Repositories
virus-detection-nf
Nextflow workflow for virus detection, integration site mapping and splice-variant detection.
hicer-nf
Nextflow workflow for basic HiC data processing
Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
awesome-nextflow
A curated list of nextflow based pipelines
ksp-garage
VAB and SPH vessels for Kerbal Space Program
nextflow-ngs
Generic Nextflow processes for next-generation sequencing data analysis
palantir
Palantir application for managing and browsing NGS analysis results
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
t-neumann.github.io
versalignLib
Showcase of parallelization technologies using sequence alignment algorithms
t-neumann's Repositories
t-neumann/slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
t-neumann/nextflow-ngs
Generic Nextflow processes for next-generation sequencing data analysis
t-neumann/t-neumann.github.io
t-neumann/versalignLib
Showcase of parallelization technologies using sequence alignment algorithms
t-neumann/ksp-garage
VAB and SPH vessels for Kerbal Space Program
t-neumann/Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
t-neumann/awesome-nextflow
A curated list of nextflow based pipelines
t-neumann/BalancedBinarySquareNumberBruteForce
Brute force script for listing all permutations of a binary number with equal 1s and 0s of a given fixed length and finding square numbers in this set.
t-neumann/palantir
Palantir application for managing and browsing NGS analysis results
t-neumann/bamgineer
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
t-neumann/bioconda-recipes
Conda recipes for the bioconda channel.
t-neumann/cryptocurrency-course-materials
Additional materials related to Bitcoin and Cryptocurrency Technologies course on Coursera, maintained by the mentors of that course.
t-neumann/maxulysse.github.io
My own jekyll personnal website
t-neumann/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
t-neumann/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
t-neumann/ncov
Nextstrain build for novel coronavirus (nCoV)
t-neumann/nextflow
A DSL for data-driven computational pipelines
t-neumann/nf-co.re
Files for the main nf-core website >>>
t-neumann/palantir-importer
Data import into persisted objects for palantir application
t-neumann/palantir-processor
NGS data preparation and processing for palantir import
t-neumann/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
t-neumann/Porechop
adapter trimmer for Oxford Nanopore reads
t-neumann/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
t-neumann/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
t-neumann/salmon-nf
Salmon Nextflow toy pipeline
t-neumann/samplot
Plot structural variant signals from many BAMs and CRAMs
t-neumann/slamseq
nf-core slamseq development repository
t-neumann/test-datasets
Test data to be used for automated testing with the nf-core pipelines
t-neumann/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
t-neumann/website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)