| title | authors | date |
|---|---|---|
Identification of age-related CpG sites from longitudinal DNA methylation data of two avian species |
Marianthi Tangili, Joanna Sudyka, Fabricio Furni |
24/04/2024 |
Data for identification of age-related CpG sites from longitudinal avian methylomes
01: Bioinformatics code for DNA methylation extraction from WGBS and EMSeq data
02:
Merging DNA methylation measurements per CpG site per sample in one data frame per species
Running the initial part of the pipeline for identification of age-related CpG sites
03: Functional annotation of all CpG sites captured by our analysis
04:
Final steps of the pipeline
Functional annotation of age-related CpG sites
Statistical analyses
Plots
preprint: https://www.biorxiv.org/content/10.1101/2024.07.31.605993v1
Information about each step is found as comments in the scripts
Scripts 01,02,03 were run using the hpc of the University of Groningen Hábrók (https://www.rug.nl/society-business/centre-for-information-technology/research/services/hpc/facilities/habrok-hpc-cluster?lang=en)
The raw sequencing data used in this paper (for both species) can be found at: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1108628