wgbs
There are 33 repositories under wgbs topic.
igordot/sns
Analysis pipelines for genomic sequencing data
sajuukLyu/Protocols-4pub
Multi-omics analysis protocols by Lyu.
ben-laufer/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
jlab-code/MethylStar
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
ENCODE-DCC/wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
ben-laufer/CpG_Me
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
hhg7/defiant
Differential methylation: Easy, Fast, Identification and ANnoTation
benoukraflab/TFregulomeR-old
TFregulomeR reveals transcription factors’ context-specific features and functions
itsvenu/ALPS
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
waterlandlab/CluBCpG
Cluster-based analysis of CpG methylation
lulizou/boostme
R package to impute methylation within WGBS using machine learning
cemordaunt/comethyl
An R package for weighted region comethylation network analysis
DKFZ-ODCF/AlignmentAndQCWorkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs
cemordaunt/DMRfinder
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
cemordaunt/WilsonDiseaseEpigenome
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
luuloi/Meth10X
Whole Genome Bisulfite Sequencing Alignment pipeline
ben-laufer/FASTQ_Me
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
huishenlab/Biscuit_Snakemake_Workflow
Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
linquynus/TFregulomeR-dev
TFregulomeR reveals transcription factors’ context-specific features and functions
ben-laufer/PCB-Placenta-and-Brain
Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
LieberInstitute/BiocMAP
Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow
stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINT
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
YoannPa/Computational_Epigenomics
This repository contains data and functions related to computational epigenomics data analysis.
cemordaunt/AutismCordBloodMethylation
Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
cemordaunt/WilsonDiseaseThioredoxin
Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease
dcolinmorgan/mili_benchmark
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
huishenlab/iscream
Reading and manipulating WGBS data
christacaggiano/snakemake_WGBS
Using Snakemake to implement ENCODE WGBS pipeline
CompEpigen/methrix_docs
Documentation for methrix R package
hmyh1202/WGBS
A Whole-genome Bisulfite Sequencing(WGBS) pipline
labbcb/methseq
Automation tool for high-throughput sequencing DNA methylation data