Pinned Repositories
nbspike
Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein
smc56_nse256
Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.
bayesian_metamodeling_tutorial
Bayesian metamodeling tutorial; supplementary to the paper "Bayesian metamodeling: divide-and-conquer modeling of complex systems across varying representations" ()
CMPSC_240A
ColabFold
Making Protein folding accessible to all via Google Colab!
FEM_course_project
finite element method library and example problem for term project in the course Finite Element Methods, UC Santa Barbara
grocery_delivery_COVID19
imp
The Integrative Modeling Platform
masfe2023_workshop
Material presented at IMP workshop MASFE 2023, IISER Pune
tanmoy7989's Repositories
tanmoy7989/bayesian_metamodeling_tutorial
Bayesian metamodeling tutorial; supplementary to the paper "Bayesian metamodeling: divide-and-conquer modeling of complex systems across varying representations" ()
tanmoy7989/CMPSC_240A
tanmoy7989/ColabFold
Making Protein folding accessible to all via Google Colab!
tanmoy7989/FEM_course_project
finite element method library and example problem for term project in the course Finite Element Methods, UC Santa Barbara
tanmoy7989/grocery_delivery_COVID19
tanmoy7989/imp
The Integrative Modeling Platform
tanmoy7989/Lammps_dev
Repository of my contributions for the Molecular Dynamics code LAMMPS.
tanmoy7989/masfe2023_workshop
Material presented at IMP workshop MASFE 2023, IISER Pune
tanmoy7989/imp-sampcon
Scripts to assess sampling convergence and exhaustiveness
tanmoy7989/imp_install
Automated minimal builds of the Sali-lab software IMP
tanmoy7989/lammps
Public development project of the LAMMPS MD software package
tanmoy7989/nb_stability
MD simulations of nanobody dynamics with framework mutations
tanmoy7989/openmmforcefields
CHARMM and AMBER forcefields for OpenMM (with small molecule support)
tanmoy7989/pdbfixer
PDBFixer fixes problems in PDB files
tanmoy7989/PMI_analysis
tanmoy7989/protein_model
CG protein model (REASONABLE)
tanmoy7989/pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
tanmoy7989/python-fire
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
tanmoy7989/scripts
Collection of (research-specific) scripts that are useful time to time
tanmoy7989/setup_my_workstation
dotfiles and other common settings to setup new mac and linux workstations for me
tanmoy7989/tanmoy7989
tanmoy7989/tanmoy7989.github.io
hosts my personal website