Pinned Repositories
battenberg
Battenberg R package for subclonal copynumber estimation
contacts
covid-19-immunity
Differential equation models that incorporate waning immunity
dpclust3p
Dirichlet Process Clustering Pre-Processing Pipeline
rhat_ess
rhat and neff
sci-reports
Simple python scripts for analysis of NGS data
Stan-Workshop
Workshop on statistical Bayesian model fitting using the Stan language
transmission-dynamics-klebsiella
Scripts to allow replication of the analysis from "Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country"
ward-infection-ABM
Agent based models to simulate the acquisition of bacterial organisms in a hospital ward
worm-inference
Models to infer helminth worm burden at the community level
tc13's Repositories
tc13/ward-infection-ABM
Agent based models to simulate the acquisition of bacterial organisms in a hospital ward
tc13/covid-19-immunity
Differential equation models that incorporate waning immunity
tc13/transmission-dynamics-klebsiella
Scripts to allow replication of the analysis from "Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country"
tc13/worm-inference
Models to infer helminth worm burden at the community level
tc13/battenberg
Battenberg R package for subclonal copynumber estimation
tc13/contacts
tc13/dpclust3p
Dirichlet Process Clustering Pre-Processing Pipeline
tc13/rhat_ess
rhat and neff
tc13/sci-reports
Simple python scripts for analysis of NGS data
tc13/Stan-Workshop
Workshop on statistical Bayesian model fitting using the Stan language
tc13/Uganda-Scripts
Python scripts for analysis of NGS data from parasite genomics seq project