tdrose

Biological Data Scientist

EMBLGermany

Pinned Repositories

metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
Language:TypeScript45 10 61810
metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Language:Python8 3 90
deep_mzClustering
Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.
Language:Jupyter Notebook0 0 00
lightning-cvae
CVAE models for my Towards Data Science Article
Language:Jupyter Notebook3 2 10
lipidranking_metaspace
Implementation of prior-knowledge based lipid ranking algorithm for METASPACE datasets.
Language:Jupyter Notebook00
medium-articles-code
Pyhon code for my Towards Data Science articles
Language:Jupyter Notebook8 1 02
metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
Language:TypeScript0 0 00
metaspace_analysis
Large-scale analysis of the METASPACE knowledge base | Publication: https://doi.org/10.1101/539478
Language:Jupyter Notebook0 1 50
mosbi
Multi-algorithm Ensemble Biclustering Method MoSBi | Publication: https://doi.org/10.1073/pnas.2118210119
Language:R0 1 10
rpi-imageclassification-webserver
Simple django webserver running a MobileNet v2 classification model.
Language:Python00

tdrose/medium-articles-code
Pyhon code for my Towards Data Science articles
Language:Jupyter Notebook8 1 02
tdrose/lightning-cvae
CVAE models for my Towards Data Science Article
Language:Jupyter Notebook3 2 10
tdrose/deep_mzClustering
Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.
Language:Jupyter Notebook0 0 00
tdrose/lipidranking_metaspace
Implementation of prior-knowledge based lipid ranking algorithm for METASPACE datasets.
Language:Jupyter Notebook00
tdrose/metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
Language:TypeScript0 0 00
tdrose/metaspace_analysis
Large-scale analysis of the METASPACE knowledge base | Publication: https://doi.org/10.1101/539478
Language:Jupyter Notebook0 1 50
tdrose/mosbi
Multi-algorithm Ensemble Biclustering Method MoSBi | Publication: https://doi.org/10.1073/pnas.2118210119
Language:R0 1 10
tdrose/rpi-imageclassification-webserver
Simple django webserver running a MobileNet v2 classification model.
Language:Python00
tdrose/ionimage_embedding
DL based representation learning of MS imaging data
Language:Python