tdsone

tdsone's Stars

• thebiodesignlab/helix

  Language:Python6

• oxpig/CaLM

  Protein language model trained on coding DNA

  Language:Python359

• Seeliglab/2017---Deep-learning-yeast-UTRs

  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"

  Language:Jupyter Notebook145

• chaimleib/intervaltree

  A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

  Language:Python631106

• hgbrian/biomodals

  bioinformatics tools running on modal

  Language:Python362

• fburic/protein-mgem

  Language:Jupyter Notebook11

• dpryan79/libBigWig

  A C library for handling bigWig files

  Language:C7325

• deeptools/pyBigWig

  A python extension for quick access to bigWig and bigBed files

  Language:C21448

• pfizer-opensource/bigwig-loader

  A fast dataloader for bigwig files made for machine learning

  Language:Python241

• evolutionaryscale/esm

  Language:Python1.2k128

• ML-Bioinfo-CEITEC/genomic_benchmarks

  Benchmarks for classification of genomic sequences

  Language:Jupyter Notebook10914

• arun-sub/genomicsbench

  A benchmark suite to study the performance characteristics of genomics applications

  Language:C298

• fchollet/ARC-AGI

  The Abstraction and Reasoning Corpus

  Language:JavaScript3.4k557

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl463151

• joshuavaple/melhousing

  Melbourne housing market data analysis, packaging style

  Language:Python9

• ratschlab/aestetik

  AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

  Language:Python9

• ragnorc/hackernews.bio

  Language:TypeScript1

• CatIIIIIIII/RNAErnie

  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"

  Language:Python286

• soap117/DeepRule

  Language:Python12844

• Layout-Parser/layout-parser

  A Unified Toolkit for Deep Learning Based Document Image Analysis

  Language:Python4.8k463

• phamquiluan/PubLayNet

  ICDAR 2019: MaskRCNN on PubLayNet datasets. Paragraph detection, table detection, figure detection,...

  Language:Python17639

• pengyu965/ChartDete

  Context-Aware Chart Element Detection

  Language:Python244

• TheJaeLal/LineFormer

  Line Chart Data Extraction: Official code for LineFormer - ICDAR23 Paper

  Language:Jupyter Notebook245

• dilawar/PlotDigitizer

  A Python utility to digitize plots.

  Language:Python11922

• PatWalters/practical_cheminformatics_tutorials

  Practical Cheminformatics Tutorials

  Language:Jupyter Notebook797143

• calico/baskerville

  Machine learning methods for DNA sequence analysis.

  Language:Python295

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k504

• frederikkemarin/BEND

  Benchmarking DNA Language Models on Biologically Meaningful Tasks

  Language:Python9113

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook932112

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython776275