Pinned Repositories
automata-from-regex
A python program to build nfa, dfa and minimised DFA from given regular expression. Uses Tkinter for GUI and GraphViz for graphs.
aws-lambda-python-serverless-ci
BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
borzoi
RNA-seq prediction with deep convolutional neural networks.
breseq-cloud
breseq usable for free without installing or using the command line
Buchhaltung-und-Steuern-lernen
Buchhaltung und Steuern für UG lernen
protein-bigrams
Model that learns protein bigrams from sequence data to hallucinate new proteins.
TakeHomeTaskGagneurLab
tdsone's Repositories
tdsone/BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
tdsone/borzoi
RNA-seq prediction with deep convolutional neural networks.
tdsone/breseq-cloud
breseq usable for free without installing or using the command line
tdsone/Buchhaltung-und-Steuern-lernen
Buchhaltung und Steuern für UG lernen
tdsone/ChartDete
Context-Aware Chart Element Detection
tdsone/CodonBERT
Repository for mRNA Paper and CodonBERT publication.
tdsone/daily-cognitive-eval
A web app that allows you to test your cognitive performance.
tdsone/deepseed
tdsone/DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
tdsone/dldl
Deeply Learning Deep Learning
tdsone/DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
tdsone/DNABERT_2
The official implementation of DNABERT-2.
tdsone/evo
DNA foundation modeling from molecular to genome scale
tdsone/evoaug
Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
tdsone/evolution
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
tdsone/ExpressionGAN
tdsone/ExpressionGAN-pytorch
ExpressionGAN implementation in PyTorch
tdsone/gflownet
GFlowNet library specialized for graph & molecular data
tdsone/LineFormer
Line Chart Data Extraction: Official code for LineFormer - ICDAR23 Paper
tdsone/marxville
A MIT-licensed, deployable starter kit for building and customizing your own version of AI town - a virtual town where AI characters live, chat and socialize.
tdsone/MMDiff
Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
tdsone/mres-s3
tdsone/mres-s5
tdsone/MRes_2023_Protocols
tdsone/nucleotide-transformer
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
tdsone/openVectorEditor
Teselagen's Open Source Vector/Plasmid Editor Component
tdsone/s1a-course-work
tdsone/SecretoGen
A conditional generative model for signal peptides
tdsone/TSignal
tdsone/yeast-GEM
The consensus GEM for Saccharomyces cerevisiae