Pinned Repositories
automata-from-regex
A python program to build nfa, dfa and minimised DFA from given regular expression. Uses Tkinter for GUI and GraphViz for graphs.
aws-lambda-python-serverless-ci
BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
borzoi
RNA-seq prediction with deep convolutional neural networks.
breseq-cloud
breseq usable for free without installing or using the command line
Buchhaltung-und-Steuern-lernen
Buchhaltung und Steuern für UG lernen
calendso
Scheduling infrastructure for absolutely everyone.
ChartDete
Context-Aware Chart Element Detection
CisRegModels
Scripts for building computational models of gene regulation with tensorflow
extract-line-chart-data
A repo that lets you automatically extract the data of a line chart.
tdsone's Repositories
tdsone/evoaug
Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
tdsone/breseq-cloud
breseq usable for free without installing or using the command line
tdsone/ChartDete
Context-Aware Chart Element Detection
tdsone/evolution
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
tdsone/openVectorEditor
Teselagen's Open Source Vector/Plasmid Editor Component
tdsone/BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
tdsone/ExpressionGAN
tdsone/ExpressionGAN-pytorch
ExpressionGAN implementation in PyTorch
tdsone/CisRegModels
Scripts for building computational models of gene regulation with tensorflow
tdsone/promoter_design
Promoter activity measurement and modeling; artificial promoter design and testing
tdsone/langchain-chat-nextjs
Next.js frontend for LangChain Chat.
tdsone/protein-bigrams
Model that learns protein bigrams from sequence data to hallucinate new proteins.
tdsone/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
tdsone/protein-MLP
Multi-layer-perceptron implementation to generate protein sequences.
tdsone/DDGScan
Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2
tdsone/DeepExpression
tdsone/automata-from-regex
A python program to build nfa, dfa and minimised DFA from given regular expression. Uses Tkinter for GUI and GraphViz for graphs.
tdsone/aws-lambda-python-serverless-ci
tdsone/yetfl
tdsone/calendso
Scheduling infrastructure for absolutely everyone.
tdsone/genesis
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
tdsone/SecrifyDL
tdsone/Yeast_kapp
tdsone/SPGen
tdsone/TakeHomeTaskGagneurLab
tdsone/SalmonTools
Useful tools for working with Salmon output
tdsone/CodeBase
tdsone/fbgan
tdsone/MI-POGUE
Data and code from "Predicting growth rate from gene expression" to run Model-Independent Prediction of Growth Using Expression (MI-POGUE) as described in Wytock and Motter, PNAS 2018.