teng-gao
Postdoctoral fellow at Boston Children’s Hospital and Harvard Medical School
Harvard Medical SchoolBoston, MA
Pinned Repositories
hahmmr
Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
scistreer
R/Rcpp implementation of the ScisTree algorithm
Gao_NC_CH
Code and Data for Gao et al., Nature Communications 2021
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BayesCF
Bayesian inference of mutational cell fractions
BreaKmer_analysis
ockerized BreaKmer algorithm by Ryan Abo: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330340/
BreaKmer_backup
A method to identify structural variation from sequencing data in target regions (Abo et al.)
facets2n
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing. Package created to test FACETS with both matched and unmatched normal.
genomics_utils
Utilities for genomics and NGS data analysis
teng-gao's Repositories
teng-gao/genomics_utils
Utilities for genomics and NGS data analysis
teng-gao/facets2n
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing. Package created to test FACETS with both matched and unmatched normal.
teng-gao/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
teng-gao/BayesCF
Bayesian inference of mutational cell fractions
teng-gao/BreaKmer_analysis
ockerized BreaKmer algorithm by Ryan Abo: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330340/
teng-gao/BreaKmer_backup
A method to identify structural variation from sequencing data in target regions (Abo et al.)
teng-gao/clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
teng-gao/kmeans
Implementation of K-means clustering algorithm with Spark and application on earthquake data
teng-gao/DALEX
Descriptive mAchine Learning EXplanations
teng-gao/docker-cnacs
🐳 A python 2.7 container with CNACs requirements and db.
teng-gao/fishplot
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
teng-gao/genomics
2017 AI & Genomics Hackathon in San Francisco
teng-gao/hiraksarkar.github.io
teng-gao/INTEGRATE-Vis
Tool for comprehensive gene fusion visualization
teng-gao/minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
teng-gao/numbat
Haplotype-aware CNV analysis from scRNA-Seq
teng-gao/phangorn
Phylogenetic analysis in R
teng-gao/redefining_cancer_treatment
Applying Bayesian methods to Kaggle competition "Personalized Medicine: Redefining Cancer Treatment"
teng-gao/rTensor
rTensor v1.2
teng-gao/sciclone
An R package for inferring the subclonal architecture of tumors
teng-gao/scRNA-seq_notes
A list of scRNA-seq analysis tools
teng-gao/teng-gao.github.io
teng-gao/teng-gao.github.io_MM
https://teng-gao.github.io/
teng-gao/teng-gao.github.io_old
Website
teng-gao/treehmm
Implementation of treeHMM for CNV detection
teng-gao/website
Personal website
teng-gao/website-new