teng-gao

teng-gao's Stars

• nomic-ai/gpt4all

  GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.

  Language:C++70.3k6401.9k7.7k

• jmschrei/pomegranate

  Fast, flexible and easy to use probabilistic modelling in Python.

  Language:Python3.4k95782589

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k24823981

• pgmpy/pgmpy

  Python Library for learning (Structure and Parameter), inference (Probabilistic and Causal), and simulations in Bayesian Networks.

  Language:Python2.7k74899714

• sproogen/modern-resume-theme

  A modern static resume template and theme. Powered by Jekyll and GitHub pages.

  Language:HTML2.1k19551.4k

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R627281146

• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

  Language:R164918723

• kushagra06/CS228_PGM

  🌀 Stanford CS 228 - Probabilistic Graphical Models

  Language:Python1154058

• secastel/phaser

  phasing and Allele Specific Expression from RNA-seq

  Language:Python108107337

• KChen-lab/Monopogen

  SNV calling from single cell sequencing

  Language:HTML8038018

• genepi/imputationserver

  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

  Language:Java7913041

• jibolash/Eve

  Ultra Minimal Single-page Jekyll Template for Building Personal Portfolio Websites

  Language:HTML594028

• aschein/bptf

  Bayesian Poisson tensor factorization

  Language:Python5710224

• kharchenkolab/scITD

  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

  Language:R514121

• Michorlab/tnbc_scrnaseq

  Language:R407040

• uci-cbcl/tree-hmm

  Tree hidden Markov model for learning epigenetic states in multiple cell types

  Language:Python271137

• ypan1988/roptim

  General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() solver

  Language:C++20384

• navinlabcode/copykit

  Toolkit for single-cell copy number analysis

  Language:R183564

• wulingyun/CRF

  R package for Conditional Random Fields

  Language:R18129

• amf71/cloneMap

  An R package to plot maps of clone distributions in somatic evolution

  Language:R15124

• single-cell-genetics/MQuad

  Tool for modelling of mitochondrial heteroplasmy

  Language:Python155159

• ChrisMaherLab/INTEGRATE-Vis

  Language:Python14286

• kharchenkolab/hahmmr

  Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq

  Language:R13320

• chenweng1991/redeemR

  R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

  Language:Jupyter Notebook123175

• faridrashidi/trisicell

  Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data

  Language:Python10262

• inmybrain/SClineager

  SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers

  Language:R9142

• parklab/Salamander

  Salamander is a non-negative matrix factorization framework for signature analysis

  Language:Python8200

• kharchenkolab/scistreer

  R/Rcpp implementation of the ScisTree algorithm

  Language:R6312

• amkozlov/cellphy-paper

  Language:Shell3310

• chenweng1991/redeem_reproducibility

  Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

  Language:Jupyter Notebook21