Pinned Repositories
app-library
Tercen app library
ceph-docker
Docker files and images to run Ceph in containers
developers_guide
A guide for building Tercen modules
flowsom_mst_shiny_example
View the Minimum Spanning Tree based on FlowSOM clustering.
median_mad_app
A Tercen app that calculates the median and the median absolute deviation (MAD) within each cell that contains a set of replicates.
rustson
Rust TSON
tara_guidi2016_data
Data from a TARA Oceans study
tara_guidi2016_workflow_guide
Document describing the data analysis workflow of TARA Oceans data using Tercen
tercen_studio
A development environment for Tercen.
TSON
TSON, short for Typed JSON, is a binary-encoded serialization of JSON-like document that support javascript typed data.
tercen's Repositories
tercen/mad_operator
Compute the Median Absolute Deviation (MAD) of a set of data points
tercen/median_mad_operator
Compute the median and Median Absolute Deviation (MAD) of a set of data points.
tercen/generalised_linear_model_operator
Fit a generalised linear model on a set of data points.
tercen/logicle_operator
Logicle transform for channel-specific flow cytometry data transformation using variance stabilisation.
tercen/logit_operator
tercen/median_operator
Compute the median of a set of data points
tercen/min_max_operator
Compute the minimum and maximum of a set of data points.
tercen/minus_operator
performs a cell wise minus operation
tercen/multiple_testing_operator
Corrections for multiple testing.
tercen/multiply_operator
Multiply two values.
tercen/multiplybyconstant_operator
Multiply input values by given constant
tercen/nonlinear_regression_operator
Fit non linear curves to a set of data points.
tercen/normalyzer_operator
normalization methods from the NormalyzerDE package
tercen/orderBy_operator
Order data according to row- or column-wise metrics
tercen/pairwise_distance_operator
Compute pairwise distance between a set of variables.
tercen/pca_operator
PCA: Principal Component Analysis
tercen/PCA_shiny
Performs and displays a Principal Component Analysis
tercen/peacoqc_operator
Quality control on flow cytomety data using peacoQC.
tercen/percentile_operator
Percentile operator
tercen/phenograph_operator
PhenoGraph clustering method.
tercen/product_operator
Calculates the product of a set of points
tercen/proportion_operator
Computes counts and relative proportions
tercen/qqplot_operator
Create a quantile-quantile plot.
tercen/rank_by_row_mean_operator
Rank data by the row mean
tercen/read_png_operator
Reads in a PNG image and converts it to a table
tercen/read_rds_operator
imports a RDS R object
tercen/regression_coefficients_operator
Compute regression coefficient for a set of covariates.
tercen/rfsrc_operator
Compute feature (and interaction) importance based on a random forest model.
tercen/RMSD_operator
Computes the Relative Mean Squared Deviation
tercen/snn_clustering_operator
Cluster single-cell RNA-seq data using SNN Graph Clustering