Mirror a volume through saggital plane through center from right to left
python3 mirror.py -t MEBRAINS_T1.nii.gz seg_mn_lr/MEBRAINS_segmentation_mn.nii seg_mn_lr/MEBRAINS_segmentation_mn_sym.nii.gz
usage: mirror.py [-h] [--template TEMPLATE_FILENAME] [--offset OFFSET] [--clobber] input_filename output_filename
Mirorr a volume.
input_filename: Filename of brain volume to mirror.
output_filename: Output filename.
-h, --help: show this help message and exit
--roi-dir ROI_DIR, -r ROI_DIR: Output directory for individual ROI volumes. (Default=roi
--template TEMPLATE_FILENAME, -t TEMPLATE_FILENAME: Optional filename of brain template to use as reference.
--offset OFFSET: Value to add to mirrored region to create unique mirrored ROI.
--clobber Overwrite existing results